PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_24200V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 437aa    MW: 47392.4 Da    PI: 6.8901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_24200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-20162213156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++ykGVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa+a++aa  +l+ge
  Pp3c8_24200V3.1.p 162 PKYKGVRQRR-WGKWVAEIRIPRQ---RTRRWLGSFDTAEEAARAYDAASVSLRGE 213
                        79*****998.**********954...5999*******************999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-13162213IPR001471AP2/ERF domain
CDDcd000189.94E-31162220No hitNo description
PROSITE profilePS5103222.286163220IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20163221IPR016177DNA-binding domain
SMARTSM003801.0E-32163226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-27163221IPR001471AP2/ERF domain
PRINTSPR003671.1E-9164175IPR001471AP2/ERF domain
PRINTSPR003671.1E-9186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAVMGYSRNS SREREGQRTF HETHDGSSSS GRGSVADSCS ACGSLSTVGS NNCSFEQQFQ  60
RTMYSASSPQ CVEQGFCSTL GPVSSQIHVG LAEAYIGDPI QCSLPPGLSA YRAISYDHSQ  120
MILSQPQDSV NRIPPRKLWN PSVHLGTRTK NLKATVQKKN GPKYKGVRQR RWGKWVAEIR  180
IPRQRTRRWL GSFDTAEEAA RAYDAASVSL RGEGTHRNFP REESHQRVLG SGAQSSVDDS  240
GVFTPASPNR NSLALDDTAL GTAYPTVCEA KIHAGDIGLP LIEPITKHGT QELEVESRVF  300
GNVWYADHFS FLESGSSTSS PFRSTPGTSS TSETRYVSSP GSDATGILLE GWSPDYLDDF  360
LGGVQSSAHD ISWDWDEFQI PPPASPKSFQ DLDVVPVSGI SSNTSICSTN RSSVRLSSSR  420
EVLVWKPCGV NEVLQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171632321480Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382060.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A2K1K8J80.0A0A2K1K8J8_PHYPA; Uncharacterized protein
STRINGPP1S221_67V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.18e-18ERF family protein