PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_22450V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 1118aa MW: 124749 Da PI: 5.2005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_22450V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.4e-07	274	320	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 W+ +E+ +++v ++G g+Wk I + + +R++ q+k+++q+ Pp3c8_22450V3.1.p 274 HWSVDEEVAVKRGVSKFGAGSWKEIKEGDPtlANRSPVQIKEKFQMM 320 7*****************************9**********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.071	267	325	IPR017930	Myb domain
SMART	SM00717	3.6E-6	271	323	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	272	318	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-8	272	320	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-7	273	320	IPR001005	SANT/Myb domain
CDD	cd11660	7.98E-13	273	321	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence Send to blast
MLSQLGCADE DNDVDPQLGY PPAYPKLCRH AHASGLPMPY TEGPPQRFLP YCPETEDFKV 60 WDKVFPVVAG REKGLPDTRK FAEELWQQLE HLGNAGFDPA KFRVDPYGNV VHWNADPSSP 120 LAWDVDLWFP YPRGGRTKLP NLRIVQWQAC LRKRNRLEFL VPWWDLQHGC SINQFLSAFA 180 AKNADFRKRS FALFFARGED ESVAREHVGE CRPWPQQFRE KKALCGLAAA ALVNAPKKHN 240 AEGLTGASTP EALTISDIPL SPQGAASETP SKRHWSVDEE VAVKRGVSKF GAGSWKEIKE 300 GDPTLANRSP VQIKEKFQMM RGVSRRNGVS STGHGKSDLS GRQSAATTAL QKELRVKIMR 360 EEERREREEE LVQLEETVVK LKVENEKERL KALELESLLK KHKHRVEKQR KLAESQSSYR 420 LCLERVLRDT MHQTMAYKEQ ARLTQEACNV LTSRLDSQKI ACEAMESDLL QVHAQQEILE 480 AAAGGIDDRT TLLLKKPVTK GRDIVDVSSC VCLRAIDEED DEEEEKLIMT ANKLSESDTE 540 DEGEEELNLR REHQHAAVGK SLVKHAIKVA IQVDDMKEEV DSCSWDLVPV EAKSPCPTVT 600 SAYSMQSRME VRGSGDIAII PNLQYEADSE SLETESDSDF ADDELSPAGH DSKDACTDDA 660 VLVNELSQFH EGPTSELRDF CSRNSKAGES DIGVIDFAFE HSQDPSSEPA LDTSIPSAGE 720 SKSDSKQEVQ KDVIMVQTPS SNGHAAHESI DASPLFRQEY LDELLKQIRF QIPTTEVTGD 780 GPLHVSEGHL DELLEKVLTT HLNNIRRNDA SKQHQSCDVD DEKLREIGKS NLDKWLQVLL 840 FKDTESAGTS PGRETPDQTS STTLSSISVA AMRESLDRAR HQECVSRDDE NGERPKSLWT 900 TLVRKLSVKH HSEHESVFKR NENFGVEQQN SPRISQHGAD LSDAMKSPQR QSPNDLATEQ 960 ISSNGSILVE SMRFDASEIG TLMGWPGGIQ LPGITSNYHS KVNAIDSIPL NSDPSAIWKT 1020 ERRVEDGVPV HALDYVYSSE RRHYPRSLSD VDEASETESA DNSNKSPNTA VTENHDISRS 1080 KKSVSVKVAG FVGWKKASKK SEAPKPSHDE HVLSTME*

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence Send to blast

MLSQLGCADE DNDVDPQLGY PPAYPKLCRH AHASGLPMPY TEGPPQRFLP YCPETEDFKV  60
WDKVFPVVAG REKGLPDTRK FAEELWQQLE HLGNAGFDPA KFRVDPYGNV VHWNADPSSP  120
LAWDVDLWFP YPRGGRTKLP NLRIVQWQAC LRKRNRLEFL VPWWDLQHGC SINQFLSAFA  180
AKNADFRKRS FALFFARGED ESVAREHVGE CRPWPQQFRE KKALCGLAAA ALVNAPKKHN  240
AEGLTGASTP EALTISDIPL SPQGAASETP SKRHWSVDEE VAVKRGVSKF GAGSWKEIKE  300
GDPTLANRSP VQIKEKFQMM RGVSRRNGVS STGHGKSDLS GRQSAATTAL QKELRVKIMR  360
EEERREREEE LVQLEETVVK LKVENEKERL KALELESLLK KHKHRVEKQR KLAESQSSYR  420
LCLERVLRDT MHQTMAYKEQ ARLTQEACNV LTSRLDSQKI ACEAMESDLL QVHAQQEILE  480
AAAGGIDDRT TLLLKKPVTK GRDIVDVSSC VCLRAIDEED DEEEEKLIMT ANKLSESDTE  540
DEGEEELNLR REHQHAAVGK SLVKHAIKVA IQVDDMKEEV DSCSWDLVPV EAKSPCPTVT  600
SAYSMQSRME VRGSGDIAII PNLQYEADSE SLETESDSDF ADDELSPAGH DSKDACTDDA  660
VLVNELSQFH EGPTSELRDF CSRNSKAGES DIGVIDFAFE HSQDPSSEPA LDTSIPSAGE  720
SKSDSKQEVQ KDVIMVQTPS SNGHAAHESI DASPLFRQEY LDELLKQIRF QIPTTEVTGD  780
GPLHVSEGHL DELLEKVLTT HLNNIRRNDA SKQHQSCDVD DEKLREIGKS NLDKWLQVLL  840
FKDTESAGTS PGRETPDQTS STTLSSISVA AMRESLDRAR HQECVSRDDE NGERPKSLWT  900
TLVRKLSVKH HSEHESVFKR NENFGVEQQN SPRISQHGAD LSDAMKSPQR QSPNDLATEQ  960
ISSNGSILVE SMRFDASEIG TLMGWPGGIQ LPGITSNYHS KVNAIDSIPL NSDPSAIWKT  1020
ERRVEDGVPV HALDYVYSSE RRHYPRSLSD VDEASETESA DNSNKSPNTA VTENHDISRS  1080
KKSVSVKVAG FVGWKKASKK SEAPKPSHDE HVLSTME*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024383573.1	0.0	uncharacterized protein LOC112286160
TrEMBL	A0A2K1K8D1	0.0	A0A2K1K8D1_PHYPA; Uncharacterized protein
STRING	PP1S152_10V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2877	2	7

Link Out ? help Back to Top
Phytozome	Pp3c8_22450V3.1.p