PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_19750V3.2.p
Common NamePHYPADRAFT_166697
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 585aa    MW: 64136.2 Da    PI: 6.6063
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_19750V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.22.5e-14741135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C +Cg  +TplWR+gp  ++ LCnaCG ++r kg+
  Pp3c8_19750V3.2.p  7 CGHCGIATTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                       9***************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-8155IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-10543No hitNo description
CDDcd002029.30E-15655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003203.1E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.686740IPR000679Zinc finger, GATA-type
PfamPF139191.6E-8287424IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MGKQGPCGHC GIATTPLWRN GPPEKPVLCN ACGSRWRTKG TLSNYMPMHS GGFGGAVSSE  60
GTALKRGRRN NKKMFSGSCK RKEPSESHQE TRAPLRSLTR SLKAAGDDSI STSSLSSNVS  120
GLDDATIIPS LNAYVDVAAS SPLWEGHIPT KRRTLTPRMC TSVDKLSQQF QQAVYDILPP  180
SSTAMHGFSD DLLVDSKPST MADEIGLGSV FIRQPTFAVD KSESRSSMEE ELSQTRVQKH  240
GGPLQQLLNG AERLPSMRGK EKAKEYKKVE SGNLKANNTL LENYPYKKRD VLKSCQSPLV  300
FLELKDILNF DTFTGLLTEQ EQGELMRFLS SEDIAKASES LKEMFTSAEF EGSLNNFQQL  360
LEEGMFESFM LGANLRIPQH FQQLLIQTDL ISSGWMEQFL QLQNRSRRRG GSVDLNKSKE  420
FNKEKGKGYE LHTKSAPAST KQSPGRLPSQ SGANVQSGCL ISASVVSGKT SEPVNFVPDI  480
GNSSSDRAYG FEGGGACYPS NSLLSTEQMS ATDLPDLQAP GSDETEADLL FNMPTNMMTF  540
QDTVLQQPVW SKTKEVDTFQ VDMGSPLTSN MWHMDSAPAE LYWT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.173460.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382996.10.0GATA transcription factor 26-like isoform X1
RefseqXP_024382997.10.0GATA transcription factor 26-like isoform X1
RefseqXP_024382998.10.0GATA transcription factor 26-like isoform X1
RefseqXP_024383000.10.0GATA transcription factor 26-like isoform X1
RefseqXP_024383001.10.0GATA transcription factor 26-like isoform X1
TrEMBLA9SUX60.0A9SUX6_PHYPA; Predicted protein
STRINGPP1S122_34V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.17e-54GATA transcription factor 26
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]