PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_1870V3.1.p
Common NamePHYPADRAFT_161688
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 486aa    MW: 53082.8 Da    PI: 5.8336
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_1870V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.23.8e-092466440
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      r C+ ++++ ++++Ce ++ +lC  C  + H+       H++v
  Pp3c8_1870V3.1.p 24 RACDGCGSQGARWYCEADNAYLCSRCDRSVHSAnalasrHERV 66
                      68*****************************667888888876 PP
2CCT737.2e-25438481144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Pp3c8_1870V3.1.p 438 REARVMRYKEKRRTRLFSKKIRYEVRKLNAECRPRMKGRFVKRT 481
                       9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-102168IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0352168IPR000315B-box-type zinc finger
CDDcd000212.48E-82468No hitNo description
PfamPF006438.0E-72466IPR000315B-box-type zinc finger
PROSITE profilePS5101715.874438480IPR010402CCT domain
PfamPF062032.2E-18438480IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MARPKSTAHT NMATAMAIAG RASRACDGCG SQGARWYCEA DNAYLCSRCD RSVHSANALA  60
SRHERVRLNP HGTVSQVPKK ALVDTSGADG NDAHKPHHPR STHTHFLPSR KRSRLCQRPN  120
PHLQHAADIS NPEHRRGKMK TESRNPGESH EVPNFITINI QESPLSFAHD SATGISMAEF  180
CKGRATATAA MYVGVEDAYE ELSSGDSGPD FLVPNGYTED FDSAIGAPTE YHQNAGSPLD  240
SGNGDEDSDN SHEMACVGDG LQLCGSDERY EGYPLEFSDI VGLGNGDAFE EDCENTSGFV  300
DECCEVNGGG LGNGMECSLQ AKMSLEQQKG FSFSKDFYYE VNQECIVPDS YDLIRKEVAD  360
VLRCSLEGEP MKHTPSLLQL NYEDVLSAWS DRCLWTDGKC PQKLPDDSYS EIAGDVGLVP  420
DLSNGCQAVP GGGGDGGREA RVMRYKEKRR TRLFSKKIRY EVRKLNAECR PRMKGRFVKR  480
TPGCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448464RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176440.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382894.10.0zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A2K1K5S10.0A0A2K1K5S1_PHYPA; Uncharacterized protein
STRINGPP1S35_69V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-22B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]