PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_16730V3.1.p
Common NamePHYPADRAFT_166389
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 700aa    MW: 72026.2 Da    PI: 9.3708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_16730V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09216258344
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         WT+eEd+ l+ av ++G g+W+t+ +      R++ q+  rw
  Pp3c8_16730V3.1.p 216 LWTPEEDLALIAAVDKYGEGNWTTVLKNHYdFDRSASQLSQRW 258
                        5************************986444445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-13207262IPR009057Homeodomain-like
PROSITE profilePS5129415.993209266IPR017930Myb domain
SuperFamilySSF466898.28E-13211264IPR009057Homeodomain-like
SMARTSM007172.0E-6213264IPR001005SANT/Myb domain
PfamPF002499.3E-8216258IPR001005SANT/Myb domain
CDDcd116601.78E-12217263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MAPVKLPFAD TDLAPLVKRY SASTIVTMLR EIARCKSPKL DWVMLCKSTV TGITNPKEYQ  60
AVWRSLAYRA ELEDSFEDNE APLDDDSDLD VELDPVPTVS AAVAESISSF VKTDLQQHEH  120
DELMEHNAGQ AGVGHQAADN AVVNKQQGSG LLVKPDESAE LVPIPNTAGV PYLASATQCA  180
ATHGESAAIL SCSTSTKAAY PAAVMNQSDA RKRRRLWTPE EDLALIAAVD KYGEGNWTTV  240
LKNHYDFDRS ASQLSQRWAL IRKRREVQEK AGYGGSGVSL LASGYNNIER LDGPKPGTLA  300
GPGMQKDTGR PGDKAMPFGN APTPMKQPPS SASTVPVGKR NPGATTPSGT ETTASVLETQ  360
RARALPAPGV STSRAGVPAQ RPQAHNQTSM RGGATAGAST ALQTLKGAVH EGSAGGSHTH  420
ASAVWRPGQG SAVGNQMFYT STQPVTSSVP MDSKYSASRN MTTGVSRGGS KGVHGPDPMI  480
QAAAMAAGAR IAPASTAASL LKAAQSGNVV HIGSGGLPRS KLGLSNQAGN GNAGGSSGII  540
HYIRTGSGGS SLATSNTSLQ RTTSHHMSKN HLNRAPHPVG NSSPSPVPTV PPQAARNNSQ  600
VPSQAGKPSP TSRVPATRGS SPQQQMTAPA LTPASTPAST TASTSSSTPA STSTPAPLST  660
SAVTPPQTSL STPSTSVPTP ACGFCTTEPI ADIPGEGTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214RKRRR
2211215KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383368.10.0mucin-19-like isoform X1
TrEMBLA0A2K1K7K40.0A0A2K1K7K4_PHYPA; Uncharacterized protein
STRINGPP1S114_137V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-29MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]