PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_1620V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 297aa MW: 32387.8 Da PI: 4.552

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_1620V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56	8.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t++ ++++v+ +fdfl +iv + Pp3c8_1620V3.4.p 6 DTRFPAARIKKIMQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMNSFHLKQCVQTNSVFDFLQEIVSK 86 5789*************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.8E-27	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	3.84E-20	3	88	IPR009072	Histone-fold
Pfam	PF00808	5.2E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEEVGKIAMA TPVLISKALE LFLQNLCDKT YEITLRRGAK 60 TMNSFHLKQC VQTNSVFDFL QEIVSKVPDL GTETTCDERN GGKRRKQSDG DDSDEEEVVK 120 RPKSEEQSAS GRGRGRGRGR GRGRGRGRGS NGTPSTRTIG VEKAEDSDDA EMDTYSPSPD 180 RANIILDPIV HKAIPKPEEA VSANPSPTSS GPSKSPKVLD FDLNMDLDEN GEIPAGADEA 240 TAKEEEIELD GPSNVPTQDL DVDSEHVLGC TLHLQRSELC PSVHSDEDDY DCEDDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-24	2	72	5	75	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRGRGRGR
2	139	148	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024383537.1	0.0	dr1-associated corepressor-like isoform X1
TrEMBL	A0A2K1KX73	1e-160	A0A2K1KX73_PHYPA; Uncharacterized protein
STRING	PP1S35_42V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-50	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pp3c8_1620V3.4.p