PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_1620V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YC | ||||||||
Protein Properties | Length: 215aa MW: 23490.4 Da PI: 9.2621 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.9 | 4.5e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t++ ++++v+ +fdfl +iv + Pp3c8_1620V3.2.p 6 DTRFPAARIKKIMQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMNSFHLKQCVQTNSVFDFLQEIVSK 86 5789*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-27 | 2 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.92E-20 | 3 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKKKLDTRFP AARIKKIMQA DEEVGKIAMA TPVLISKALE LFLQNLCDKT YEITLRRGAK 60 TMNSFHLKQC VQTNSVFDFL QEIVSKVPDL GTETTCDERN GGKRRKQSDG DDSDEEEVVK 120 RPKSEEQSAS GRGRGRGRGR GRGRGRGRGS NGTPSTRTIG VEKAEDSDDA EMDTYSPSPD 180 RANIILDPIV HKAIPKPEEA VSANPSPTSS GPRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-25 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 147 | RGRGRGRGRGR |
2 | 139 | 148 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383538.1 | 1e-137 | dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A2K1K5S3 | 1e-155 | A0A2K1K5S3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S35_42V6.1 | 1e-152 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-51 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_1620V3.2.p |