PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_11630V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 632aa    MW: 71698.9 Da    PI: 4.4755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_11630V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-09599625127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lCr+++r G C+ G  C+FaHg+
  Pp3c8_11630V3.3.p 599 YKTKLCRYYLRPGGCNDGRLCNFAHGE 625
                        9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530981.08E-8114229IPR012337Ribonuclease H-like domain
PfamPF134564.9E-9118232No hitNo description
Gene3DG3DSA:3.30.40.102.6E-5267355IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.05E-12279361No hitNo description
SMARTSM001846.7E-4283330IPR001841Zinc finger, RING-type
PROSITE profilePS500899.848283328IPR001841Zinc finger, RING-type
PROSITE patternPS005180301310IPR017907Zinc finger, RING-type, conserved site
SMARTSM006478.1E-13352428IPR002867IBR domain
PfamPF014855.7E-12357428IPR002867IBR domain
Gene3DG3DSA:3.30.40.102.6E-5401424IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM006470.69445499IPR002867IBR domain
SuperFamilySSF578501.3E-15446506No hitNo description
PfamPF014854.0E-6449497IPR002867IBR domain
Gene3DG3DSA:4.10.1000.107.9E-14596630IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8597630IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5598625IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662598626IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7599625IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASATRTSQA EPWDDPHHGM EGGIWDLEYV YQLQLEEVMA ASIAGMMREE ETIHDNPVEV  60
GVVEARIGGI EAVVEEEEVN EVGGERVEEE EEEEVDDGSV VDCEQEHDIE VRAVKTPEGH  120
VGIGALITRN DSVLWRESKY VGIGMSWHVA EYGGVLDAME VAERLGLRFL NVFVSSRVVS  180
EQVNGFWKPK QTNQWMLLYQ VQDAMQNFSS FGIRSWPKGS YNNFVTQLAQ AAITNHLIGD  240
ASSSYSGAST AGAFDGVFHP NVTSHASTSA YSSNSRRESK ENCLICLEDK LPSEMATVKK  300
CLHEFCDACL RRHAEVQVQA SQVPIRCPES GCSEELEYPE ECKQYLTVEV FNILTKRLTE  360
ARVPEGDRVY CPYTNCSALM DKGGLDPPGQ STSVAPNKLS TYQKVACAEC RRSFCLECRV  420
PWHKNRSCQE YQNLPPDLRD AEESNLYKLA QNQKWQRCKK CRRMIELAEG CYHMTCRCGY  480
EFCYTCGTEW KNKKQQCQCK LWDERNIIRT PRESDDESED DLFFGDDGDD DNMLVDDFFG  540
YDDEEEFDDV DYDWVMTDVG NPFRGFELVG ELHGVNRMFD GLGLEPTVPH QIPFANRLYK  600
TKLCRYYLRP GGCNDGRLCN FAHGEHELRH V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.98970.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382068.10.0uncharacterized protein LOC112285450
TrEMBLA0A2K1K6U80.0A0A2K1K6U8_PHYPA; RBR-type E3 ubiquitin transferase
STRINGPP1S62_86V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-06C3H family protein