PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_10910V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 784aa    MW: 88105.6 Da    PI: 6.7686
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_10910V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.12.2e-08298387285
           trihelix   2 WtkqevlaLiearremeerlrrg..klkkplWeevskkm..rergferspkqCkekwenlnkrykkike..gekkrtsessstcpyfdql 85 
                        W+++ev +Li +r e+e ++ ++  k+    W++  ++m  +  gf+rs   C+ k+++l k++kk      e+k++  +++  +++d+l
  Pp3c8_10910V3.2.p 298 WMDSEVETLISLRWELEPDFLKNayKQGVDMWSQLQARMssAIPGFTRSGLACQRKFNSLIKQHKKDVLdvKEGKHHTWDRHARKFYDSL 387
                        ********************9863379999*********65567*********************9543003333334444455666666 PP
2trihelix32.52.3e-10583653268
           trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkm..rergferspkqCkekwenlnkrykkikege 68 
                        W ++ev +Li +r+em++++ +  +k+ ++ W++  ++m     gf+rsp  Ck k++ l + +kk  ++ 
  Pp3c8_10910V3.2.p 583 WADSEVETLIGLRKEMDSEFVKnwKKQGGNMWSKLRSRMlsLYPGFTRSPLACKRKFNTLVRHHKKYMHIL 653
                        ********************99456899***********77778*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.854290358IPR017877Myb-like domain
SMARTSM0071710294360IPR001005SANT/Myb domain
PfamPF138371.1E-7296388No hitNo description
PROSITE profilePS500905.599434502IPR017877Myb-like domain
PROSITE profilePS500906.539575643IPR017877Myb-like domain
SMARTSM007170.83579645IPR001005SANT/Myb domain
PfamPF138374.5E-9581658No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSSPDAAPVA PSEESCCSQD ITATESDLVT TGKSLKGVKR DISGMDDAED DASPIKKMKA  60
SPGLRSIHAT TTIMNPQARS EECDSTIASL KSSLRNANEE LERWKQAFID NSILPSGTTP  120
DPAAVVQVIQ KLQASEVQLQ EQLLTARRRE GALLVKLGNT EHEILGLKST VRSLKRQSKW  180
PLSSVARSLL PKPANFDEVS RLKKELKPAE KITMEVPDIT ASIYIRPQNM RSNVLNAEFP  240
ADLTENSGAA CEVLEDKEDD GLQLMYVPFP STKKKLGSSR KYLIAKEEAE GEEAKKNWMD  300
SEVETLISLR WELEPDFLKN AYKQGVDMWS QLQARMSSAI PGFTRSGLAC QRKFNSLIKQ  360
HKKDVLDVKE GKHHTWDRHA RKFYDSLDRC WHTNGTVMKH VTANSMHVNH SDSDTALTNG  420
NKEENLRMSV KEDEGEEAKK NWLDSEAETM VSLRWEMEPE FVGNAYKTGE DMWSKLQMRM  480
VSLIPGFQRS GLACQRKFNA LIKQHKKDIL ELKESGRERY NYRFYDILDR WWHTNGTVMK  540
HVTASPNDSE SLGNPEHLTE YLDDASNKLL REGDEGEEGK KNWADSEVET LIGLRKEMDS  600
EFVKNWKKQG GNMWSKLRSR MLSLYPGFTR SPLACKRKFN TLVRHHKKYM HILAASGEEP  660
LNFKHHDLLV QWLHNNRTSL RCSTATASAS ASASDSDLNQ LTTGDPTVAS ESQRDVCKPN  720
KAESSIIPYV VGIQYGINVP GSLSNVIEPS SDVNEKDKPS MLLAKLDGEI DPFMDSLKPT  780
VSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382267.10.0uncharacterized protein LOC112285575 isoform X2
TrEMBLA0A2K1K6R50.0A0A2K1K6R5_PHYPA; Uncharacterized protein
STRINGPP1S62_17V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.14e-06Trihelix family protein