PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_10910V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 571aa    MW: 64962.2 Da    PI: 6.6085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_10910V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.81.4e-0885174285
           trihelix   2 WtkqevlaLiearremeerlrrg..klkkplWeevskkm..rergferspkqCkekwenlnkrykkike..gekkrtsessstcpyfdql 85 
                        W+++ev +Li +r e+e ++ ++  k+    W++  ++m  +  gf+rs   C+ k+++l k++kk      e+k++  +++  +++d+l
  Pp3c8_10910V3.1.p  85 WMDSEVETLISLRWELEPDFLKNayKQGVDMWSQLQARMssAIPGFTRSGLACQRKFNSLIKQHKKDVLdvKEGKHHTWDRHARKFYDSL 174
                        ********************9863379999*********65567*********************9543003333334444455666666 PP
2trihelix33.11.5e-10370440268
           trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkm..rergferspkqCkekwenlnkrykkikege 68 
                        W ++ev +Li +r+em++++ +  +k+ ++ W++  ++m     gf+rsp  Ck k++ l + +kk  ++ 
  Pp3c8_10910V3.1.p 370 WADSEVETLIGLRKEMDSEFVKnwKKQGGNMWSKLRSRMlsLYPGFTRSPLACKRKFNTLVRHHKKYMHIL 440
                        ********************99456899***********77778*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.85477145IPR017877Myb-like domain
SMARTSM007171081147IPR001005SANT/Myb domain
PfamPF138376.6E-883175No hitNo description
PROSITE profilePS500905.599221289IPR017877Myb-like domain
PROSITE profilePS500906.539362430IPR017877Myb-like domain
SMARTSM007170.83366432IPR001005SANT/Myb domain
PfamPF138372.8E-9368445No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEVPDITASI YIRPQNMRSN VLNAEFPADL TENSGAACEV LEDKEDDGLQ LMYVPFPSTK  60
KKLGSSRKYL IAKEEAEGEE AKKNWMDSEV ETLISLRWEL EPDFLKNAYK QGVDMWSQLQ  120
ARMSSAIPGF TRSGLACQRK FNSLIKQHKK DVLDVKEGKH HTWDRHARKF YDSLDRCWHT  180
NGTVMKHVTA NSMHVNHSDS DTALTNGNKE ENLRMSVKED EGEEAKKNWL DSEAETMVSL  240
RWEMEPEFVG NAYKTGEDMW SKLQMRMVSL IPGFQRSGLA CQRKFNALIK QHKKDILELK  300
ESGRERYNYR FYDILDRWWH TNGTVMKHVT ASPNDSESLG NPEHLTEYLD DASNKLLREG  360
DEGEEGKKNW ADSEVETLIG LRKEMDSEFV KNWKKQGGNM WSKLRSRMLS LYPGFTRSPL  420
ACKRKFNTLV RHHKKYMHIL AASGEEPLNF KHHDLLVQWL HNNRTSLRCS TATASASASA  480
SDSDLNQLTT GDPTVASESQ RDVCKPNKAE SSIIPYVVGI QYGINVPGSL SNVIEPSSDV  540
NEKDKPSMLL AKLDGEIDPF MDSLKPTVSI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382266.10.0uncharacterized protein LOC112285575 isoform X1
TrEMBLA0A2K1K6R50.0A0A2K1K6R5_PHYPA; Uncharacterized protein
STRINGPP1S62_17V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.13e-06Trihelix family protein