PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_940V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 439aa    MW: 47842.1 Da    PI: 6.5142
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_940V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.85.3e-77632751220
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA+av+++++e ++a+L+++s las +gdpmqR+a+yf+e+Laar+++s+++lykal++++ +  ++ + ++a+++f+ v+P++kf+
  Pp3c7_940V3.2.p  63 LIHLLLACAHAVANNNMEYTNAYLEQISVLASLTGDPMQRVATYFMEGLAARITKSWPGLYKALHSTHLP--SVMDIISARQVFFSVCPYVKFA 154
                      689*************************************************************999998..59******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +l+ NqaIl+a+ege+ vHi+D+++s ++QW+aLl++L+ R+egpp+lRiTgv+     +k+ le+tg+rL++ Ae+l++pf+f++l + +le+
  Pp3c7_940V3.2.p 155 FLMGNQAILDAMEGEKVVHIVDLEASDPVQWLALLEELSVRKEGPPHLRITGVSL----KKDVLEQTGQRLSEEAEKLDIPFQFHPL-VASLEK 243
                      *******************************************************....9**************************5.889*** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                      l++++L+vk+gEa+a++++++lh ll+++++ 
  Pp3c7_940V3.2.p 244 LDVDSLKVKSGEAVAISSMMRLHPLLAKETDA 275
                      *************************9665543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.44237438IPR005202Transcription factor GRAS
PfamPF035141.8E-7463275IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPGMIKGETS NSISHSPSLS VSTTSFSSLS HVSGHQSSPS TASTPAQLTW LQDLRSEERG  60
LYLIHLLLAC AHAVANNNME YTNAYLEQIS VLASLTGDPM QRVATYFMEG LAARITKSWP  120
GLYKALHSTH LPSVMDIISA RQVFFSVCPY VKFAFLMGNQ AILDAMEGEK VVHIVDLEAS  180
DPVQWLALLE ELSVRKEGPP HLRITGVSLK KDVLEQTGQR LSEEAEKLDI PFQFHPLVAS  240
LEKLDVDSLK VKSGEAVAIS SMMRLHPLLA KETDAVLRTE NDNHNHPVIR HLRSSSGGYE  300
RITYVSRDEA INTAGEVGSD RGLKRSREMY EAAPEVGAET LKNHVDASEA GVRQQLPRSM  360
SLSDGNGTNV ESRGFQSQQR IHAGALRGSF ALLLCRVRLA KLDSSAALSG EGDFGEVPPW  420
AGDQEYRGVR RSREGGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-445525911217Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.9190.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381004.10.0scarecrow-like protein 3
RefseqXP_024381005.10.0scarecrow-like protein 3
RefseqXP_024381006.10.0scarecrow-like protein 3
SwissprotQ9LPR87e-88SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K1K9U30.0A0A2K1K9U3_PHYPA; Uncharacterized protein
STRINGPP1S130_153V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-89scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]