PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_9340V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 282aa    MW: 30451.2 Da    PI: 8.1982
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_9340V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.97.9e-39451461101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p  +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a
  Pp3c7_9340V3.2.p  45 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVAKLLLHIPVPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVASLQA 137
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkeel 101
                       ela+++++l
  Pp3c7_9340V3.2.p 138 ELAMVQAQL 146
                       *****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.95144146IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-3845143IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRGGLSNFES VTTGLVRSRS SWGGSSSTFG EGSGRYATSM SSGAPCGACK FLRRKCVRGC  60
IFAPYFGAEQ GAARFAAVHK IFGASNVAKL LLHIPVPRRC DAVLTISYEA QARLSDPVYG  120
CVATIFALQQ QVASLQAELA MVQAQLVNRQ AVVHQIHQHQ QQHHQHHHHL QQQHEQISTM  180
SPGHVPSSAY MQQHEHSQLS PSDISMSIPS GSGSVKEEGN SFLGMQHYGD LGLGSSSLEP  240
MSGNQHSLLE NIHKPRGGGE NIEQTDHEGD LQALALLLRR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-36381474112LOB family transfactor Ramosa2.1
5ly0_B1e-36381474112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.76466e-98protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381331.10.0LOB domain-containing protein 29-like
RefseqXP_024381332.10.0LOB domain-containing protein 29-like
TrEMBLA0A2K1KB330.0A0A2K1KB33_PHYPA; Uncharacterized protein
STRINGPP1S261_2V6.12e-97(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-62LOB domain-containing protein 20