PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7990V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 666aa    MW: 72015.5 Da    PI: 7.7068
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7990V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16163261197
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +gr W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +  +
  Pp3c7_7990V3.9.p 163 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-AD 253
                       89**************************555556778***************9989999999***9.********************765.56 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                       ++lv++ +
  Pp3c7_7990V3.9.p 254 GKLVMGYR 261
                       66666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-27158263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-18160262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-20161262No hitNo description
PROSITE profilePS5086310.687163264IPR003340B3 DNA binding domain
PfamPF023621.0E-13163262IPR003340B3 DNA binding domain
SMARTSM010191.4E-16163263IPR003340B3 DNA binding domain
PROSITE profilePS5105012.878397447IPR011124Zinc finger, CW-type
PfamPF074968.8E-10402444IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET  60
DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQGPLR  120
VARPPGEGRG RNQLLPRYWP RITDQELKQI NSGDMQTTIT PLFEKMLSAS DAGRIGRLVL  180
PKACAEAYFP PIHQPEGLPL RIQDVTGRDW VFQFRFWPNN NSRMYVLEGV TPCIQSMKLH  240
AGDTVTFSRL EADGKLVMGY RKAPTSLSSQ DAGATRVGAN SNTGFSNPSS VVIQSADGWG  300
SNVGGSKSKE SGISIGNLWS SQMDRKRGRP LGSKSKRLRL DSIDSMLLKS NWEEAQELLR  360
PAPSASSTVV TIDGHEFEEY SEPPVLSKRT FISNAPSGAQ EQWAQCDDCG TWRRVPVDAF  420
VPARWSCSQN TWDLTRAQCS AAQEVSSDKL EVLLGPGPTS EGGKQECAPK LTSTSKDENA  480
PTTSAAAGLD ALAQAASTSL SPARTTKHPR HRPGCTCIVC IQPPSGKGPK HKASCICNVC  540
LTVKRRFRTL MQRRKKRQCE REFEAFRNKR EWHEEDTSDL VGVVGRSGTA DAANIVDDNL  600
STALIRSRDG GSEDGPLKGA IDLNIQPDHE ERVSMSNQTV WRAGMQEESS PQSFQEIQCS  660
QAHQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-621402632124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1543555KRRFRTLMQRRKK
2543556KRRFRTLMQRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380837.10.0B3 domain-containing protein Os07g0679700-like isoform X3
SwissprotQ0D5G41e-163Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-153HSI2-like 1