PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_7720V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HSF

Protein Properties

Length: 468aa MW: 52526.2 Da PI: 4.9621

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_7720V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.9	9e-35	46	137	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye++e ++++ ++swse gnsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +gk+++l Pp3c7_7720V3.5.p 46 FLIKTYEMVEVSATDAIVSWSEVGNSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFMRGKRDML 129 9**************************************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k Pp3c7_7720V3.5.p 130 RSIRRRKP 137 ***985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.4E-38	36	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.63E-33	41	135	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.2E-60	42	135	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-30	46	135	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	46	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	85	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	97	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGSETPWPSV ETHDNAGKLA LAAGIASANP APQMDAPPQS SGPPPFLIKT YEMVEVSATD 60 AIVSWSEVGN SFVVWNPPEF AQDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG 120 FMRGKRDMLR SIRRRKPAVH TQQQQGSCVE VGKLGLEGEI ERLKRDKNVL MLELVRLRQQ 180 QQSTERELQV MTQRFHVSEH RQQRMISFLT KAMQNPSFFA QFVSQQNENN QVVRKKRRLP 240 IHEYGDMHES MSPESSIENQ MVAFQPSELG EAGARARVIE MFRSSDSQPA TESSRFEGLV 300 READTSPNSG DSNMLNRQPR ATLELNTKLS GIFSSAPIVT DVSANESLEA PPTSPQTFDM 360 ARVLSGSRSE RRDSGDSHEP EGNRGTATHE AEVQSARTDT AAHNSGFWEQ FLTEDPQPVT 420 RAEIDLEREP ESETEDTPQD DENALQNSFD RPCVEFLSHQ MGQLAPG*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGSETPWPSV ETHDNAGKLA LAAGIASANP APQMDAPPQS SGPPPFLIKT YEMVEVSATD  60
AIVSWSEVGN SFVVWNPPEF AQDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG  120
FMRGKRDMLR SIRRRKPAVH TQQQQGSCVE VGKLGLEGEI ERLKRDKNVL MLELVRLRQQ  180
QQSTERELQV MTQRFHVSEH RQQRMISFLT KAMQNPSFFA QFVSQQNENN QVVRKKRRLP  240
IHEYGDMHES MSPESSIENQ MVAFQPSELG EAGARARVIE MFRSSDSQPA TESSRFEGLV  300
READTSPNSG DSNMLNRQPR ATLELNTKLS GIFSSAPIVT DVSANESLEA PPTSPQTFDM  360
ARVLSGSRSE RRDSGDSHEP EGNRGTATHE AEVQSARTDT AAHNSGFWEQ FLTEDPQPVT  420
RAEIDLEREP ESETEDTPQD DENALQNSFD RPCVEFLSHQ MGQLAPG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-25	20	135	2	129	Heat shock factor protein 1
5d5v_B	3e-25	20	135	2	129	Heat shock factor protein 1
5d5v_D	3e-25	20	135	2	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.286	0.0	gametophore\| protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380709.1	0.0	heat stress transcription factor A-2e-like
Swissprot	Q84T61	8e-92	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2K1KAV6	0.0	A0A2K1KAV6_PHYPA; Uncharacterized protein
STRING	PP1S42_157V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	8e-92	heat shock transcription factor A1E

Link Out ? help Back to Top
Phytozome	Pp3c7_7720V3.5.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]