PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_7720V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HSF

Protein Properties

Length: 435aa MW: 49254.6 Da PI: 5.0113

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_7720V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	8e-35	13	104	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye++e ++++ ++swse gnsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +gk+++l Pp3c7_7720V3.2.p 13 FLIKTYEMVEVSATDAIVSWSEVGNSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFMRGKRDML 96 9**************************************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k Pp3c7_7720V3.2.p 97 RSIRRRKP 104 ***985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.6E-38	5	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-33	8	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.2E-60	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-30	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDAPPQSSGP PPFLIKTYEM VEVSATDAIV SWSEVGNSFV VWNPPEFAQD LLPKYFKHNN 60 FSSFVRQLNT YGFRKVDPDR WEFANEGFMR GKRDMLRSIR RRKPAVHTQQ QQGSCVEVGK 120 LGLEGEIERL KRDKNVLMLE LVRLRQQQQS TERELQVMTQ RFHVSEHRQQ RMISFLTKAM 180 QNPSFFAQFV SQQNENNQVV RKKRRLPIHE YGDMHESMSP ESSIENQMVA FQPSELGEAG 240 ARARVIEMFR SSDSQPATES SRFEGLVREA DTSPNSGDSN MLNRQPRATL ELNTKLSGIF 300 SSAPIVTDVS ANESLEAPPT SPQTFDMARV LSGSRSERRD SGDSHEPEGN RGTATHEAEV 360 QSARTDTAAH NSGFWEQFLT EDPQPVTRAE IDLEREPESE TEDTPQDDEN ALQNSFDRPC 420 VEFLSHQMGQ LAPG*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDAPPQSSGP PPFLIKTYEM VEVSATDAIV SWSEVGNSFV VWNPPEFAQD LLPKYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEGFMR GKRDMLRSIR RRKPAVHTQQ QQGSCVEVGK  120
LGLEGEIERL KRDKNVLMLE LVRLRQQQQS TERELQVMTQ RFHVSEHRQQ RMISFLTKAM  180
QNPSFFAQFV SQQNENNQVV RKKRRLPIHE YGDMHESMSP ESSIENQMVA FQPSELGEAG  240
ARARVIEMFR SSDSQPATES SRFEGLVREA DTSPNSGDSN MLNRQPRATL ELNTKLSGIF  300
SSAPIVTDVS ANESLEAPPT SPQTFDMARV LSGSRSERRD SGDSHEPEGN RGTATHEAEV  360
QSARTDTAAH NSGFWEQFLT EDPQPVTRAE IDLEREPESE TEDTPQDDEN ALQNSFDRPC  420
VEFLSHQMGQ LAPG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-25	1	102	12	129	Heat shock factor protein 1
5d5v_B	5e-25	1	102	12	129	Heat shock factor protein 1
5d5v_D	5e-25	1	102	12	129	Heat shock factor protein 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.286	0.0	gametophore\| protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380709.1	0.0	heat stress transcription factor A-2e-like
Swissprot	Q84T61	4e-92	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2K1KAV6	0.0	A0A2K1KAV6_PHYPA; Uncharacterized protein
STRING	PP1S42_157V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	4e-92	heat shock transcription factor A1E

Link Out ? help Back to Top
Phytozome	Pp3c7_7720V3.2.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]