PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7640V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ARR-B | ||||||||
Protein Properties | Length: 533aa MW: 57855.5 Da PI: 5.3649 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 186 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+peLH++Fv+av+ L G +kA+P++il++m+v+gLt+e+v+SHLQkYR+ Pp3c7_7640V3.1.p 186 KARIVWSPELHQQFVNAVNYL-GVDKAVPRKILDIMNVQGLTRENVASHLQKYRS 239 68*******************.********************************7 PP | |||||||
2 | Response_reg | 86.4 | 8.1e-29 | 17 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+++++++l+++l++ +y v+++ ++++al++l+e++ +Dl++ D+ mp+mdG++ll+ i e +lp+i++++ ge + + + +k Pp3c7_7640V3.1.p 17 VLVVDDDNVILKILERMLRECKY-AVTTCNSATKALAMLRENRsyFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSRDGEIDSVMRGIK 107 89*********************.***************999999**********************5544.6******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ eel++ Pp3c7_7640V3.1.p 108 HGACDYLLKPVRLEELRN 125 ****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.27E-37 | 14 | 133 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.8E-42 | 14 | 152 | No hit | No description |
SMART | SM00448 | 1.1E-32 | 15 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.765 | 16 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.4E-25 | 17 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.16E-30 | 18 | 130 | No hit | No description |
PROSITE profile | PS51294 | 10.972 | 183 | 242 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-19 | 184 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-28 | 185 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-24 | 186 | 239 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-7 | 190 | 238 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MERLAHPEGF SPAGLKVLVV DDDNVILKIL ERMLRECKYA VTTCNSATKA LAMLRENRSY 60 FDLVISDVYM PDMDGFKLLE AIGLELDLPV IMMSRDGEID SVMRGIKHGA CDYLLKPVRL 120 EELRNIWQHV VRKLVSPILV SKEESGELDE YPKHQDNADF DATSRKRKER LEDETQLVED 180 VNNLKKARIV WSPELHQQFV NAVNYLGVDK AVPRKILDIM NVQGLTRENV ASHLQKYRSY 240 LKRLIGVTPQ PHPVASFQAA ENGTFGGTMQ IQPGGRPTAS SSTKGLNLGG AAAISSISGL 300 NRGGSQIDAA TLNTLVQLQS LQQKQLGTTA SRVGLTTDLV SLQTPADPTG PQMLDSFELD 360 LLMKAQHDSR QRGGGGTDYT ALLSGSKDTL PNMSSLRGHV ELKPAAMGST NLLAGSEPMT 420 AMSMSNLRGS DDLGPGLGGV DVGRSHLVNK WGGEFSNSSA FSSLTSRSNG GAVSESSFSI 480 DYGDIPDVPP EFLVASPSDL SLLGQLQAFD QGELDYDQLS QPRWSMSYSS KA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-21 | 186 | 242 | 1 | 57 | Transcription factor LUX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5930 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380962.1 | 0.0 | two-component response regulator ORR22-like | ||||
TrEMBL | A0A2K1KAV9 | 0.0 | A0A2K1KAV9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_161V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 6e-94 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7640V3.1.p |