PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7640V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 533aa    MW: 57855.5 Da    PI: 5.3649
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7640V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27186239155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r++W+peLH++Fv+av+ L G +kA+P++il++m+v+gLt+e+v+SHLQkYR+
  Pp3c7_7640V3.1.p 186 KARIVWSPELHQQFVNAVNYL-GVDKAVPRKILDIMNVQGLTRENVASHLQKYRS 239
                       68*******************.********************************7 PP
2Response_reg86.48.1e-29171251109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+++++++l+++l++ +y  v+++ ++++al++l+e++  +Dl++ D+ mp+mdG++ll+ i  e  +lp+i++++ ge + + + +k
  Pp3c7_7640V3.1.p  17 VLVVDDDNVILKILERMLRECKY-AVTTCNSATKALAMLRENRsyFDLVISDVYMPDMDGFKLLEAIGLEL-DLPVIMMSRDGEIDSVMRGIK 107
                       89*********************.***************999999**********************5544.6******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+  eel++
  Pp3c7_7640V3.1.p 108 HGACDYLLKPVRLEELRN 125
                       ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.27E-3714133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.8E-4214152No hitNo description
SMARTSM004481.1E-3215127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.76516131IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2517126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.16E-3018130No hitNo description
PROSITE profilePS5129410.972183242IPR017930Myb domain
SuperFamilySSF466895.02E-19184243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28185243IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-24186239IPR006447Myb domain, plants
PfamPF002497.3E-7190238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MERLAHPEGF SPAGLKVLVV DDDNVILKIL ERMLRECKYA VTTCNSATKA LAMLRENRSY  60
FDLVISDVYM PDMDGFKLLE AIGLELDLPV IMMSRDGEID SVMRGIKHGA CDYLLKPVRL  120
EELRNIWQHV VRKLVSPILV SKEESGELDE YPKHQDNADF DATSRKRKER LEDETQLVED  180
VNNLKKARIV WSPELHQQFV NAVNYLGVDK AVPRKILDIM NVQGLTRENV ASHLQKYRSY  240
LKRLIGVTPQ PHPVASFQAA ENGTFGGTMQ IQPGGRPTAS SSTKGLNLGG AAAISSISGL  300
NRGGSQIDAA TLNTLVQLQS LQQKQLGTTA SRVGLTTDLV SLQTPADPTG PQMLDSFELD  360
LLMKAQHDSR QRGGGGTDYT ALLSGSKDTL PNMSSLRGHV ELKPAAMGST NLLAGSEPMT  420
AMSMSNLRGS DDLGPGLGGV DVGRSHLVNK WGGEFSNSSA FSSLTSRSNG GAVSESSFSI  480
DYGDIPDVPP EFLVASPSDL SLLGQLQAFD QGELDYDQLS QPRWSMSYSS KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-21186242157Transcription factor LUX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.59300.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380962.10.0two-component response regulator ORR22-like
TrEMBLA0A2K1KAV90.0A0A2K1KAV9_PHYPA; Uncharacterized protein
STRINGPP1S42_161V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-94response regulator 2