PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_5470V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 325aa    MW: 37319.8 Da    PI: 10.3144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_5470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.7e-066690126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC  ++  G C++  +C+FaHg
  Pp3c7_5470V3.1.p 66 YKTKLCTLYLHRGSCPR-QSCSFAHG 90
                      9****************.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-116497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-66595IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3526592IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLNCAASFHS PLFIVFFIRY LFWFYIVPIR FDWCGVDKRL RRGILLRRTL PIGVRDMAFG  60
RDRDLYKTKL CTLYLHRGSC PRQSCSFAHG GAELRRMPGV LLWEVALCCK STEIALHKFS  120
LVNFTSIGHI DSRFVGLRSR FERLSPLNRL RRSHSQDRRS RGFRRTPFRD SDHSRSPTKR  180
RRSRSPSAPE LSECRRRDSK NAHIEANEPH LSDVSAEDLG TDSPGAEKDV KSRVTKNVSN  240
IRDSLEGQLA EAHDENKILV DQKTDLELEL ENKLHETTEL SDKVTILDEK VAGAQEECKG  300
LASKTRKLVK VFKLLIRAQD DLKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379766.11e-166zinc finger CCCH domain-containing protein 13-like isoform X1
RefseqXP_024379767.11e-166zinc finger CCCH domain-containing protein 13-like isoform X1
TrEMBLA0A2K1KAI70.0A0A2K1KAI7_PHYPA; Uncharacterized protein
STRINGPP1S311_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-09C3H family protein