PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_5230V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 564aa    MW: 60755.3 Da    PI: 9.8784
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_5230V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.1e-36792802131
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ss 67 
                        g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL+++ak+ai+el++                              
  Pp3c7_5230V3.2.p  79 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIKNAKAAIDELAQVppmrqedpavpaehqpqttsstvstfsA- 170
                       579*************************************************************8888666554444444433333333330. PP

               TCP  68 ssaseceaesssssasnsssg.................................................................kaaksaa 95 
                                                                                                             ++a    
  Pp3c7_5230V3.2.p 171 --------------------CppevpaapllespgtsygtydshgqsamvspfghtshgmetamelhhqhhhlgghggygpnlareQQAGLYW 243
                       ....................1444445555555555555555555555555555555566656666666666677777778887532222222 PP

               TCP  96 .kskksqksaasalnlakesrakarararertrekmr 131
                         s ++ +s  s  +   esrakar+rarer +ek+ 
  Pp3c7_5230V3.2.p 244 gGSISDVHSGGSSGAARVESRAKARERARERAKEKHI 280
                       344445555554444444888*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-3680279IPR005333Transcription factor, TCP
PROSITE profilePS5136933.72281139IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.803261278IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MYLLPSGKVG KRKSNIVYSF GKQTQLEKHP GKVEGQSKRG GGEGTSKERR VRARASDPSG  60
KKSPPEAERI RPARAARSSG GKDRHSKVNT AKGPRDRRVR LSVPTAVQFY DVQDRLGFDQ  120
PSKAVEWLIK NAKAAIDELA QVPPMRQEDP AVPAEHQPQT TSSTVSTFSA CPPEVPAAPL  180
LESPGTSYGT YDSHGQSAMV SPFGHTSHGM ETAMELHHQH HHLGGHGGYG PNLAREQQAG  240
LYWGGSISDV HSGGSSGAAR VESRAKARER ARERAKEKHI SERDPASGRI PSTYVPHHGP  300
SSASAGAQQH PHLAVQGQSL YSNLPSQVTS ALQHPFQASP AFQAGINPPL RPPPPPAAPP  360
YNAPSYNLPE AFFAYGGHYN PTSYNQAEPP LQQQQQGPSV SHYFVENPLP PSRFSIASQG  420
SISTNSMMFS GLTHVPASSL RASPFGSLIS EQQPLNYSSS SFPSPTGYQF PPSYVSSSHR  480
PPPPSSSSLL GPPPLGSSLR LSQGTMEYTH SRIRLGQGQA QGHGQFEHRS YNQAPHSLDP  540
SFYTPQIPAR LQGLEELEEE FKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2186139154Putative transcription factor PCF6
5zkt_B6e-2186139154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379774.10.0transcription factor PCF5-like, partial
TrEMBLA0A2K1KAG60.0A0A2K1KAG6_PHYPA; Uncharacterized protein
STRINGPP1S207_110V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.13e-31TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3