PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_4270V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 456aa    MW: 49222.3 Da    PI: 7.7998
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_4270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35291212103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++k F++g+k+ll
  Pp3c7_4270V3.1.p  29 FLTKTYHLVDDPATDDIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDH---------WEFANKFFRRGEKHLL 112
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  Pp3c7_4270V3.1.p 113 CEIHRRKSS 121
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3722113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3426118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MTSLSLDTSC TEGASLLTYD CHRTVPAPFL TKTYHLVDDP ATDDIVSWGE DETTFVVWRP  60
PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVPDHWEFA NKFFRRGEKH LLCEIHRRKS  120
STHASGPFSL SCDAPGSQST SPTNSGEDQA WSPFPSPLSS PSTILMPQGA STLMSDENER  180
LRHDNRMLLL ELSRLRRLYD DLVVILQQQS KVSLQELPSP SLSRDQKLAV SISEQIEAAA  240
RRSEIRELNA LRFNTNSSSH LRPPTVDSTS ASCIGHLLNR PQIQLHRADN SVTPKASTLS  300
FLDGKLREMA SNTSAQIIAS PLGDDQAKPP QAAPKLFGVS LNGSPVDASS SCHKRPWSCT  360
TTPGFVDDHA TIPPSKKIMS HVRRSEESAP ATLQRGGGGV GNGAGGGGGP VSTTAAGAGV  420
AIAASSGAPA KCMKVELGLE LRISATCAAA ERGFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-22251187110Heat shock factor protein 1
5hdn_A3e-22251187110Heat shock factor protein 1
5hdn_B3e-22251187110Heat shock factor protein 1
5hdn_C3e-22251187110Heat shock factor protein 1
5hdn_D3e-22251187110Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379894.10.0heat stress transcription factor B-4d-like
TrEMBLA0A2K1KAB50.0A0A2K1KAB5_PHYPA; Uncharacterized protein
STRINGPP1S207_20V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-63heat shock transcription factor B4