PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_25600V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family DBB
Protein Properties Length: 292aa    MW: 31519.7 Da    PI: 5.669
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_25600V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87.1e-06343438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                       + C+ ++   +  +C+ +  +lC+ C  + H g       H+
  Pp3c7_25600V3.3.p  3 KSCDACHISSAVVYCRADAAYLCAGCDGKVH-GanklasrHE 43
                       67*****999*****************9999.4456666666 PP
2zf-B_box23.11.6e-074590342
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        ++C+ +e   +   C+ +   lC +C + +H+       H++vp+
  Pp3c7_25600V3.3.p 45 VWMCEVCEVAVAVVTCKADAASLCVSCDTDIHSAnplaqrHERVPV 90
                       689******99*********************66899999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
SMARTSM003361.2E-8147IPR000315B-box-type zinc finger
CDDcd000215.17E-4547No hitNo description
PROSITE profilePS5011910.314390IPR000315B-box-type zinc finger
PfamPF006438.2E-64590IPR000315B-box-type zinc finger
SMARTSM003362.1E-94890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MPKSCDACHI SSAVVYCRAD AAYLCAGCDG KVHGANKLAS RHERVWMCEV CEVAVAVVTC  60
KADAASLCVS CDTDIHSANP LAQRHERVPV QPLFDCASSA REAHISVPFP ESECHETLKG  120
VEDSCVAEAG SWLLPHPKIP TNAIIRGSAA ADEAPDSPFR ARPFSPKLKK QKVDLAADIF  180
SDVDPFLELD DATVTGIQPD SLVPVHIPEG SEDSPSLAHS MEPSFTTDFH LSEKSGYSFG  240
TSTLTHSVSP MSLHRLWEEC SQAYAVFHEL VLLPYFVLVC RRCRGPGLQS K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.48150.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8901070.0AJ890107.1 Physcomitrella patens col-2 gene for CONSTANS-like 2, exons 1-3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380465.10.0zinc finger protein CONSTANS-LIKE 4-like
TrEMBLQ4W1E91e-180Q4W1E9_PHYPA; CONSTANS-like 2
STRINGPP1S97_109V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.16e-45CONSTANS-like 4