PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_25430V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 441aa    MW: 48627.4 Da    PI: 4.8613
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_25430V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.48.8e-27107171170
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                        r+++sL+llt+kf++l++++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwk
  Pp3c7_25430V3.4.p 107 RYDSSLGLLTKKFIDLIKQADDGVLDLNKAADTL---HV--QKRRIYDITNVLEGIGLIEKKLKNRIRWK 171
                        6899******************************...99..****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-28103172IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.62E-18107170IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-33107172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-24109171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.92E-32187288No hitNo description
CDDcd146608.30E-49188288No hitNo description
PfamPF164211.2E-33188287IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MTNQQALTWK ETLHSGRPKI ESSEINDLLY SNMKRRNKSE ERHEVEMNGW NEYVNSDLSP  60
APTPSGPRAR VSRPKAGKQA KNCPLTPRPL GAGSPTSSAP TPTSTCRYDS SLGLLTKKFI  120
DLIKQADDGV LDLNKAADTL HVQKRRIYDI TNVLEGIGLI EKKLKNRIRW KSLGMVRAAD  180
TTHGAGGLQA EVKDLYSEEK KLDESISEMR EQLRSLSEDD HNKQWLYVTE DDIKNLPCFQ  240
NETLIAIKAP LGTTLEVPDP DEAVEYPHRR FQILLRSTMG PIDVYLVSRF EGKFEEMNSS  300
EMSIEVGQSV PQAAGASSPA DAMSHEEIVS MVPDIGYDLT NLESPGSHEP ASQSSGPTNS  360
HPELAGGIMR TAPAEVTTDT DYWLLSDAGV GISDMWRTDQ SNGMWDDVMR LNSEFGIENI  420
GSPRPHTPPS SNVLEVVPVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-25102174275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.193770.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473380.0AB547338.1 Physcomitrella patens E2F;2 mRNA for E2F transcription factor;2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381634.10.0transcription factor E2FA-like isoform X1
RefseqXP_024381635.10.0transcription factor E2FA-like isoform X1
RefseqXP_024381636.10.0transcription factor E2FA-like isoform X1
TrEMBLA9SN920.0A9SN92_PHYPA; Uncharacterized protein
TrEMBLG1UDF80.0G1UDF8_PHYPA; E2F transcription factor2
STRINGPP1S97_96V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-103E2F transcription factor 3