PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_24490V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 505aa MW: 55664.1 Da PI: 7.8376 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 215 | 274 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+vk+s++pr+YYrCt+a+Cpv+k+vers+edp +v++ Yeg+H h+k Pp3c7_24490V3.1.p 215 MEDGYKWRKYGQKPVKNSPHPRNYYRCTTAHCPVRKRVERSTEDPGLVITSYEGTHSHPK 274 58********************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-33 | 200 | 274 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-28 | 208 | 274 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.458 | 210 | 275 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-35 | 215 | 274 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-25 | 216 | 273 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MALNERKDCV ETKDCSGSVD SSNGGGEEAK LSLDESKDQN YAWAQHVFES QYLDLSNFSP 60 KGLITPRLGE GGEFPDLGTI CASPLFSDQL KFLQSWSPRL PPNSELVWSP KVNNVENSES 120 VSTSTQSGES DPGSSNPMVT SDSAASGSRE ETKKSRKRLN VECTSEGSNI SGVEDVPKNK 180 RNNSSLIKQI QKNKGPKRLR EPRYAIKTRT EVDVMEDGYK WRKYGQKPVK NSPHPRNYYR 240 CTTAHCPVRK RVERSTEDPG LVITSYEGTH SHPKINQTKN SSGDLNTYEA ESLQESISQL 300 QKGLPAMTSA LPNLVSPQDN LGLLPNLDSL LTGWPSLMNR NQQPPSLQDN MSFVMAYQIV 360 RLQFELQARA QQLMRYTAAQ QSLAGGLPKN PFNIDPQGFT QFPLPDLLSL MQNYTDLSGD 420 SNQLEPNHVP KPEPIMQSSL LARRANAARL RTSSLNPNME SSLKRQQFMT QQGMAALHNA 480 GPPSEQNTSG PDQAPGPAPS SRQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-23 | 203 | 272 | 2 | 71 | WRKY transcription factor 1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15210 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381406.1 | 0.0 | probable WRKY transcription factor 20 | ||||
TrEMBL | A0A2K1KCW2 | 0.0 | A0A2K1KCW2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S407_55V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-34 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_24490V3.1.p |