PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_2390V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 1127aa    MW: 123422 Da    PI: 9.6919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_2390V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-094580340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      +W++e+ e +++a++++G++ Wk++++ +  +Rt++++
  Pp3c7_2390V3.2.p 45 PWSKEDLEMFYQAFRKYGKD-WKKVSASLH-KRTAEMV 80
                      8*****************99.*********.9**9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-104090IPR009057Homeodomain-like
SMARTSM007171.8E-64290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-54484IPR009057Homeodomain-like
CDDcd001676.58E-74588No hitNo description
PfamPF002491.1E-74581IPR001005SANT/Myb domain
SMARTSM011351.4E-50634733IPR033471DIRP domain
PfamPF065843.9E-29634728IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MASARRPRTS SKPVAKIAGG VDRNEDGTEK SKSRKRKLTD MLGSPWSKED LEMFYQAFRK  60
YGKDWKKVSA SLHKRTAEMV EALYTTNKAY LSLPEGDVSA AGLKAMMTDH YNLLDVSQSA  120
GAESSDDGVG SEERSNYIPL TKKPVTSTGM DSSSIRFDGL LGASGFGGPS PVKRPRTSSI  180
GPVGKRTPRF QTGKASEKRI KIIKVPDSKP QNVVEEDSDS DVAAARTLVS KPTTSPSASN  240
NLSRRSFRQS SVHQNGDKES LWRREPDGSV KPTASTSQAD NQLDGSPESK VLQNEGATKA  300
SSSTHTSDAD RKTPKVGDIK SKLKKPFFKK IQLQNLDDKH EAAQIREKRK ENVKELLEAA  360
ERQRIGADEP GEGSSPPPFV QRRRRPGSPP PKQKKRSRQL FSGGTYTSPA VVSNSGLDAL  420
ATLAASSLEL EGLEFATFEA YTEYLKPKAR KQSSLDGTEP KHVSKSLRAE EMRSLGNDNF  480
EGEGDLKTEE EEAASEDRRP CTSPADSKKR KRKFSGDKVL KQSEIDAVDG AGASSLGKQT  540
PKNAEDHSMD IDESSLSPKL GSKKNGVSEK LLPERIGTPS KSVNGVNSPR QESKRREKNF  600
CPHSTPELGL TSAKAKIIHC LCPKVRRWCM CEWFYSAIDL PWFARNEFVK YLNHAGLGHV  660
PRLTRIEWGV IRGSLGKPRR LSKRFLQEER EKLETYRESV RTHYHELRTG LREGLPTDLA  720
RPLTVGQKAD TLDAVREAKE VTNRAVREAN EMTVKSAVAS SRVGPHQTRS GLQSREAEVW  780
ALAELSRALD KKEALVLEFR QMNDDASSSR GGFKTPETFQ RQYATVVLQL KEVNEQVTYA  840
LLQLRQRNKY QDNAAPPWYW LITQGSLDAA EPSEPWALDR TPVLSEIAVS ARKQADLMVF  900
TAVKAMDNLK TGEDALQKLG CALDAISVPG SVSAPLQLSL YPAPTSEGDV PQDACTPSAQ  960
PGSLVQSSSS SITEDNSEVD TGTVAISSRL SQADISEPGQ RPATLKVAAQ DLTQDLNHTE  1020
TQQSAIKDCT FPVELMTSCV ATLFMLQTLS DRPSSAAEMQ QTLDSALLTL RPKSSKNNAI  1080
FKDIEQQFAS VKAQITTQIP LPTSRPSSPF GNSVLPIAAQ PAPKTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1507512KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380408.10.0LOW QUALITY PROTEIN: protein ALWAYS EARLY 3-like
TrEMBLA0A2K1KA120.0A0A2K1KA12_PHYPA; Uncharacterized protein
STRINGPP1S136_208V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-91DNA binding