PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_23900V3.1.p
Common NamePHYPADRAFT_64126
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 467aa    MW: 51316.4 Da    PI: 5.5813
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_23900V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.9e-092264440
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       r C+ + +k ++++C  +  +lC+ C ++ H+       H++v
  Pp3c7_23900V3.1.p 22 RACDVCANKSARWYCGADTAYLCDRCDTQVHSAnalakrHERV 64
                       68*****************************657888888876 PP
2CCT66.57.5e-23423465143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        Rea++lRYkeKr++R+F+K+irYe+RK +Ae+RpR+KGrFvk+
  Pp3c7_23900V3.1.p 423 REARVLRYKEKRRSRLFSKTIRYEVRKLNAERRPRMKGRFVKR 465
                        9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8691966IPR000315B-box-type zinc finger
SMARTSM003361.6E-81966IPR000315B-box-type zinc finger
CDDcd000219.93E-72266No hitNo description
PfamPF006435.2E-82264IPR000315B-box-type zinc finger
PROSITE profilePS5101715.825423465IPR010402CCT domain
PfamPF062031.6E-17423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MATKVASRSM TTAIAIAGRA SRACDVCANK SARWYCGADT AYLCDRCDTQ VHSANALAKR  60
HERVRLTVSG VPMKSSRKVT VTMADHDEDS EMPRKQSSLK KCHSAPVQVM SSRKRSRTSR  120
PHPLKRRASE AKPTSKVSKV EDVKVKEELL TFSDIFDTED FLVDDTQEVP AFITVAQDSS  180
PSSSEFDLSS PELSPEFRSD FYGVCSPSED SFAAYFKGKA AHNDFSDDVM ADQFVVPDGV  240
FDNCLDSGVN ICCDVDSSIS IAGDACFIPG DIPGLDGYED DYSLCFHLAL RDASPDSFGE  300
DSAATATATV VHPTNNAVSV EADQFGNGPF AKFFAKKPKG EKVLLSPENI KSEAKEILRC  360
SLEGLSEEDL RTAPTLRLNY EDVLTAWSDR GEPWVNPENS TDVGLVPDMG EGGADDDQTG  420
GGREARVLRY KEKRRSRLFS KTIRYEVRKL NAERRPRMKG RFVKRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380508.10.0zinc finger protein CONSTANS-LIKE 16-like isoform X2
TrEMBLA0A2K1KCT70.0A0A2K1KCT7_PHYPA; Uncharacterized protein
STRINGPP1S2_7V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-28B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]