PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c7_23490V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 422aa MW: 46338.6 Da PI: 6.5056 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +++++G g+W++ ++ g+ R++k+c++rw +yl Pp3c7_23490V3.1.p 17 KGPWTPDEDRKLVAYIQEHGHGSWRALPKNAGLMRCGKSCRLRWTNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.5e-18 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ Ed+ +v+++ lG++ W+tIa++++ gRt++++k++w++yl Pp3c7_23490V3.1.p 70 RGRFSEAEDQMIVHLHSILGNR-WSTIAAHLP-GRTDNEIKNYWNTYL 115 89********************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.14 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.93E-12 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 27.54 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-17 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.85E-13 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-27 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 422 aa Download sequence Send to blast |
MGRAPGNCDE KEAGLRKGPW TPDEDRKLVA YIQEHGHGSW RALPKNAGLM RCGKSCRLRW 60 TNYLRPDIKR GRFSEAEDQM IVHLHSILGN RWSTIAAHLP GRTDNEIKNY WNTYLKKRLL 120 QLGIDPVTHK ECSTADLVLE GADMNPLVSS TLSHMSQWDR VRMETEARLT SATSFSKSAV 180 AGGIIHPRSS FSDLEAVLQR VLGSDTFMGP WKSQVATDSA SQPIPGAASQ AVFADLQNVF 240 QGLEASSPSS ASFESLYSAC ANQLAESSSM NSHGSGHDDY HSPVSSTITS SKLLNPMSPT 300 SILSPLSNSS DILWDCNQDT SFWQTQQVNG LLMDSSTQTL PEASSHNYDQ DQLIGEPNLD 360 ARYGDSSTRE STLRYLLPEN CHSFYNLDFP QYLLQTNCKS TAAQILSAAP HIIGNPVSGR 420 K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 15 | 119 | 5 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379919.1 | 0.0 | transcription factor MYB41-like | ||||
Refseq | XP_024379920.1 | 0.0 | transcription factor MYB41-like | ||||
TrEMBL | A0A2K1KCT5 | 0.0 | A0A2K1KCT5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S2_55V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15310.1 | 3e-77 | myb domain protein 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c7_23490V3.1.p |