PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_23340V3.1.p
Common NamePHYPADRAFT_64165
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 474aa    MW: 52228.5 Da    PI: 9.0335
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_23340V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.36.7e-08264308549
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                        k + r   NR + +rsR RK+ +i eLe  v ++eae  +L  ++
  Pp3c7_23340V3.1.p 264 KTAQRILANRQSDQRSRVRKLHYISELESNVGKIEAEVASLSPKI 308
                        56778889*****************************99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-5260324IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-7264318No hitNo description
PfamPF001701.1E-6264309IPR004827Basic-leucine zipper domain
CDDcd147034.74E-16266315No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-8266329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MCAGRTASLT WMDSICAAEH HGQSVNWAHP TSNSTHPPHI SPHGFSMFSS SSFLETDGGF  60
RIPLSLPIQG GAHRRSPAGH IPQVSSAWLS DRLSSPDGEV VLKKCSHRRS ASDSVAFVDS  120
SYQFMSYLEN VTEEDEFIRQ ETALSTCMPN HRRGLSAGND SNHHGLQCKL PATPRSYPEK  180
VARGAQSSRR ENFVKIGGVE SYHRQHRHEN LAACNREGFN FAKSGSLEVS WNAEKDKKHV  240
TLAISSSKSD CWLASRDSDQ VDPKTAQRIL ANRQSDQRSR VRKLHYISEL ESNVGKIEAE  300
VASLSPKIRY HEHERVLLNV ENVILKQKLA ALTKAQRLKE ALNESLKSEV QRLRQMFNQE  360
QPPALQYPQQ RPLFLDVLDL QFLEFSKLDL GPPTTKPKLP SVFEGVRGSS NRPSLYSTKV  420
ISFIHAQDNN NADSPSSHAA KGLALPSCMA PGGKAYGGGL MADASTSSLV NNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451458GGKAYGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379985.10.0basic leucine zipper 61-like isoform X2
TrEMBLA0A2K1KCS60.0A0A2K1KCS6_PHYPA; Uncharacterized protein
STRINGPP1S2_72V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.25e-32bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]