PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_2300V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 499aa MW: 55141.4 Da PI: 5.2849 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.5e-21 | 187 | 236 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp+ + +r++lg+++taeeAa+a+++a+k+++g Pp3c7_2300V3.2.p 187 KFRGVRQRP-WGKWAAEIRDPK----KaARVWLGTYDTAEEAAQAYDNAAKEFRG 236 89*******.**********94....45************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 186 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.566 | 187 | 244 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.98E-33 | 187 | 245 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-21 | 187 | 245 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-35 | 187 | 250 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 187 | 236 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 188 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 210 | 226 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MSDQLETNKQ PEIQRPPDSN PNASNSTYRG IPNPVTEVSM IINALTNAAG LLEPLQVPEH 60 GYGAQCAKTF RMVSTTRGSQ SEHVDVAGAS ATPWLPINAE WSEQTPQRSS PSHAQDNSPQ 120 SAQFRESSWQ QQQQQQQQQQ QLQRPLAPLQ PRESQMHRTG FDQDSSGHFA GAEAEAVHSL 180 EPEKKRKFRG VRQRPWGKWA AEIRDPKKAA RVWLGTYDTA EEAAQAYDNA AKEFRGLRAK 240 LNFPDGEHLG IGTSSRISSS SRTARGPSSD SPRASSDATS GSLFAPNARH QLSIVESFLY 300 SDSHSVPENS SWNSPTRTSS STDHSPAYSA PATSSETPYL SGYSYFQPDS GSPSYYNQLG 360 PYQERRSWQE TPSSSGHQTI GMHNDSAADN RSPSNIYQPT YSSTPDEYST SGSFMATSSS 420 YMNLHDQEAI DPYNWAPQYA SNESDRYSCF QNLQSSSAPE LSYDQIFEQD SGALPSSNTG 480 NLSPSYYFPF YDRQQQFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 186 | 244 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 184 | 244 | 2 | 63 | ATERF1 |
3gcc_A | 2e-20 | 184 | 244 | 2 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379901.1 | 0.0 | ethylene-responsive transcription factor ERF061-like | ||||
TrEMBL | A0A2K1K9Z5 | 0.0 | A0A2K1K9Z5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S136_219V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-22 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_2300V3.2.p |