PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_2300V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 499aa    MW: 55141.4 Da    PI: 5.2849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_2300V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.5e-21187236255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdp+    + +r++lg+++taeeAa+a+++a+k+++g
  Pp3c7_2300V3.1.p 187 KFRGVRQRP-WGKWAAEIRDPK----KaARVWLGTYDTAEEAAQAYDNAAKEFRG 236
                       89*******.**********94....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-31186245IPR001471AP2/ERF domain
PROSITE profilePS5103224.566187244IPR001471AP2/ERF domain
CDDcd000184.98E-33187245No hitNo description
SuperFamilySSF541711.18E-21187245IPR016177DNA-binding domain
SMARTSM003801.3E-35187250IPR001471AP2/ERF domain
PfamPF008471.2E-14187236IPR001471AP2/ERF domain
PRINTSPR003677.2E-11188199IPR001471AP2/ERF domain
PRINTSPR003677.2E-11210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MSDQLETNKQ PEIQRPPDSN PNASNSTYRG IPNPVTEVSM IINALTNAAG LLEPLQVPEH  60
GYGAQCAKTF RMVSTTRGSQ SEHVDVAGAS ATPWLPINAE WSEQTPQRSS PSHAQDNSPQ  120
SAQFRESSWQ QQQQQQQQQQ QLQRPLAPLQ PRESQMHRTG FDQDSSGHFA GAEAEAVHSL  180
EPEKKRKFRG VRQRPWGKWA AEIRDPKKAA RVWLGTYDTA EEAAQAYDNA AKEFRGLRAK  240
LNFPDGEHLG IGTSSRISSS SRTARGPSSD SPRASSDATS GSLFAPNARH QLSIVESFLY  300
SDSHSVPENS SWNSPTRTSS STDHSPAYSA PATSSETPYL SGYSYFQPDS GSPSYYNQLG  360
PYQERRSWQE TPSSSGHQTI GMHNDSAADN RSPSNIYQPT YSSTPDEYST SGSFMATSSS  420
YMNLHDQEAI DPYNWAPQYA SNESDRYSCF QNLQSSSAPE LSYDQIFEQD SGALPSSNTG  480
NLSPSYYFPF YDRQQQFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20186244160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20184244263ATERF1
3gcc_A2e-20184244263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379901.10.0ethylene-responsive transcription factor ERF061-like
TrEMBLA0A2K1K9Z50.0A0A2K1K9Z5_PHYPA; Uncharacterized protein
STRINGPP1S136_219V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-22ethylene response factor 110