PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_2100V3.2.p

Common Name

PHYPADRAFT_154583

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 346aa MW: 38295.6 Da PI: 4.5307

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_2100V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k Pp3c7_2100V3.2.p 89 KKRRLTFDQVRSLELNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 142 45578999*********************************************9 PP
2	HD-ZIP_I/II	120.6	8.3e-39	88	179	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE +Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L y++lk+e e++ +e++eL+ e++ Pp3c7_2100V3.2.p 88 EKKRRLTFDQVRSLELNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLTLDYNRLKSEFEAVLQEKQELQGEME 179 69*************************************************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.77E-19	80	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	84	144	IPR001356	Homeobox domain
SMART	SM00389	9.8E-14	87	148	IPR001356	Homeobox domain
CDD	cd00086	1.97E-15	89	145	No hit	No description
Pfam	PF00046	5.5E-15	89	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.4E-19	91	151	IPR009057	Homeodomain-like
PRINTS	PR00031	6.2E-6	115	124	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.2E-6	124	140	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-14	144	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MASNVGRGGY SRGGSNVVPV RNDSSTDTLV AMLASCSPVA LQVQRTGGSL EDAVVSCGQK 60 RSFFPLFEAS REDAGDEDLG DDCTHNVEKK RRLTFDQVRS LELNFEVENK LEPERKMQLA 120 KELGLQPRQV AVWFQNRRAR WKTKQLERDY EVLTLDYNRL KSEFEAVLQE KQELQGEMEC 180 LTGRLQTSPQ LASGDGVSEK PSKKSSKAVA SQLSLQKMVS EECVKLESKP QDPNDSSNDD 240 KEEGSRATSS DSISSGILDA DSPLTTEMIT TTTLPHISIH VAAEMPLSSN IINMSDNLCN 300 QMLSPHACQQ ISVKLEDGSS QDESSSNYIL TQLDEERGLP WWDWP*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MASNVGRGGY SRGGSNVVPV RNDSSTDTLV AMLASCSPVA LQVQRTGGSL EDAVVSCGQK  60
RSFFPLFEAS REDAGDEDLG DDCTHNVEKK RRLTFDQVRS LELNFEVENK LEPERKMQLA  120
KELGLQPRQV AVWFQNRRAR WKTKQLERDY EVLTLDYNRL KSEFEAVLQE KQELQGEMEC  180
LTGRLQTSPQ LASGDGVSEK PSKKSSKAVA SQLSLQKMVS EECVKLESKP QDPNDSSNDD  240
KEEGSRATSS DSISSGILDA DSPLTTEMIT TTTLPHISIH VAAEMPLSSN IINMSDNLCN  300
QMLSPHACQQ ISVKLEDGSS QDESSSNYIL TQLDEERGLP WWDWP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.161	0.0	gametophore\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028073	0.0	AB028073.1 Physcomitrella patens mRNA for homeobox protein PpHB2, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379939.1	0.0	homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A2K1KA00	0.0	A0A2K1KA00_PHYPA; Uncharacterized protein
STRING	PP1S431_27V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-40	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_2100V3.2.p
Entrez Gene	5948143

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]