PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_20200V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 445aa MW: 49110.1 Da PI: 6.366 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.6e-20 | 312 | 363 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrd +ng +r++lg+f+tae+Aa a+++a+++++g Pp3c7_20200V3.2.p 312 PHYRGVRQRP-WGKFAAEIRDSAKNG--ARVWLGTFDTAEQAALAYDRAALNMRG 363 68********.**********65565..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.66E-31 | 312 | 371 | No hit | No description |
Pfam | PF00847 | 4.9E-15 | 312 | 363 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 313 | 372 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.433 | 313 | 371 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-37 | 313 | 377 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 313 | 372 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 314 | 325 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 337 | 353 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MTAEILSQHW EAQGLGWGCD TQRIEEERVL DNFHQCGVPE VELQQQIFFP ESYFYFPNAL 60 CSNVPFQLDT NSFPCSPSQF SDGTRSPPSS SQRSDGARSS GAVLSEQTDE ACSVASLGSS 120 KGIDQWATTL KRTLGENFTE EVRPKMVPYI DVDDFLCFDN VQDQPASPPS TEASSLCEDF 180 DKAMHSGTER RPNSCTIKRP PPPLSIPSTS QPTSSLFRDI ANKPVSPWRS KRIQCQIPEV 240 LCTDFSQAEG FPSLDQNDLE DLFSFSLLKE TGQNTIACPI PRELASACVK VEQDCQPRPT 300 TTPQKLAKQP QPHYRGVRQR PWGKFAAEIR DSAKNGARVW LGTFDTAEQA ALAYDRAALN 360 MRGSRALLNF PLKATTALSN PESLPRPPLS SSSCRQAAKN SQKQRCIHSL TKIAIASSNK 420 RPSAVASAES YELKRPRVKD ELLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-32 | 313 | 377 | 5 | 69 | ATERF1 |
3gcc_A | 1e-32 | 313 | 377 | 5 | 69 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379895.1 | 0.0 | uncharacterized protein LOC112284379 | ||||
TrEMBL | A0A2K1KCA9 | 0.0 | A0A2K1KCA9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S2_404V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-35 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_20200V3.2.p |