PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_20200V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 445aa    MW: 49110.1 Da    PI: 6.366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_20200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20312363155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr+++ +g+++AeIrd  +ng  +r++lg+f+tae+Aa a+++a+++++g
  Pp3c7_20200V3.1.p 312 PHYRGVRQRP-WGKFAAEIRDSAKNG--ARVWLGTFDTAEQAALAYDRAALNMRG 363
                        68********.**********65565..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-31312371No hitNo description
PfamPF008474.9E-15312363IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22313372IPR016177DNA-binding domain
PROSITE profilePS5103223.433313371IPR001471AP2/ERF domain
SMARTSM003807.4E-37313377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31313372IPR001471AP2/ERF domain
PRINTSPR003678.8E-11314325IPR001471AP2/ERF domain
PRINTSPR003678.8E-11337353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MTAEILSQHW EAQGLGWGCD TQRIEEERVL DNFHQCGVPE VELQQQIFFP ESYFYFPNAL  60
CSNVPFQLDT NSFPCSPSQF SDGTRSPPSS SQRSDGARSS GAVLSEQTDE ACSVASLGSS  120
KGIDQWATTL KRTLGENFTE EVRPKMVPYI DVDDFLCFDN VQDQPASPPS TEASSLCEDF  180
DKAMHSGTER RPNSCTIKRP PPPLSIPSTS QPTSSLFRDI ANKPVSPWRS KRIQCQIPEV  240
LCTDFSQAEG FPSLDQNDLE DLFSFSLLKE TGQNTIACPI PRELASACVK VEQDCQPRPT  300
TTPQKLAKQP QPHYRGVRQR PWGKFAAEIR DSAKNGARVW LGTFDTAEQA ALAYDRAALN  360
MRGSRALLNF PLKATTALSN PESLPRPPLS SSSCRQAAKN SQKQRCIHSL TKIAIASSNK  420
RPSAVASAES YELKRPRVKD ELLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-32313377569ATERF1
3gcc_A1e-32313377569ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379895.10.0uncharacterized protein LOC112284379
TrEMBLA0A2K1KCA90.0A0A2K1KCA9_PHYPA; Uncharacterized protein
STRINGPP1S2_404V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-35ethylene responsive element binding factor 2