PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_20170V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 350aa    MW: 38208.1 Da    PI: 5.1495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_20170V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-20222273155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr+++ +g+++AeIrd s+ng   r++lg+f+tae Aa a+++a+++++g
  Pp3c7_20170V3.2.p 222 PHYRGVRQRP-WGKFAAEIRDSSKNG--SRIWLGTFDTAELAALAYDRAALQMRG 273
                        68********.**********87887..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-14222273IPR001471AP2/ERF domain
CDDcd000185.48E-31222281No hitNo description
PROSITE profilePS5103223.182223281IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22223282IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-31223282IPR001471AP2/ERF domain
SMARTSM003801.4E-37223287IPR001471AP2/ERF domain
PRINTSPR003671.7E-10224235IPR001471AP2/ERF domain
PRINTSPR003671.7E-10247263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAVSLLSTPW GGFGALGCDI TPRTKMWNEL EYLQGFLLDE NEEELEFSDL IPESDNFVAP  60
ESLFTPQPFD DGLPDMQAIN AQGSYLESSS QQSDSTGTLE VSSEDCSTGS RLLQSRKPSR  120
LTLISLNLKK RLGGNFVEEI RQIVGALVDD YITAEPEDAM SANRDLCGNW VTLAPLVAPD  180
SKLQPAHSAM IEVADKVEPL AQPKLNATAD KKLAKQPKTL QPHYRGVRQR PWGKFAAEIR  240
DSSKNGSRIW LGTFDTAELA ALAYDRAALQ MRGSKALLNF PLKATTALSN PESFPPAPEP  300
SSTSRNASRI TQPTSESISQ MPCKKLTGSN KRFCSSVRLE TAKRLRAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-31223283262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.64900.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379807.10.0uncharacterized protein LOC112284328
TrEMBLA0A2K1KCE60.0A0A2K1KCE6_PHYPA; Uncharacterized protein
STRINGPP1S2_410V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.18e-24ethylene responsive element binding factor 2