PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_17700V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 2061aa    MW: 223605 Da    PI: 8.4271
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_17700V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-13649698155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s++ GVr ++ +g + AeIr p       kr +lg+f t+e Aa+a++ a++ ++g
  Pp3c7_17700V3.8.p 649 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 698
                        6899******.**********8.....55**********************98887 PP
2AP225.14.4e-089801025453
                AP2    4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53  
                         +GVr    +gr++A I+d ++   rk++++g++ +  eAa+a++   ++l
  Pp3c7_17700V3.8.p  980 TGVRKSQ-SGRFEATIYDRTT---RKKVYVGTYSSILEAARARDLKVLEL 1025
                         69*9655.8*********533...5*******************988776 PP
3AP231.93.2e-1013941441455
                AP2    4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                          GV   + +gr+ A I++p++   +k++++g f+t+eeAa a+++ + +++g
  Pp3c7_17700V3.8.p 1394 MGVQATP-SGRFKAKIYVPKT---KKHIYIGIFDTPEEAAHAYDEVAYRKRG 1441
                         6887778.7*********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138912.2E-13236298IPR025927Potential DNA-binding domain
CDDcd000184.43E-14649705No hitNo description
SuperFamilySSF541711.24E-15649706IPR016177DNA-binding domain
PfamPF008475.3E-7649693IPR001471AP2/ERF domain
SMARTSM003807.8E-28650712IPR001471AP2/ERF domain
PROSITE profilePS5103220.85650706IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-23650706IPR001471AP2/ERF domain
PRINTSPR003671.2E-5651662IPR001471AP2/ERF domain
PRINTSPR003671.2E-5672688IPR001471AP2/ERF domain
SMARTSM003801.3E-49761040IPR001471AP2/ERF domain
PROSITE profilePS5103211.439781034IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-99801035IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-89801035IPR016177DNA-binding domain
CDDcd000183.52E-119811035No hitNo description
SMARTSM003801.9E-1413921455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1613921450IPR001471AP2/ERF domain
CDDcd000185.13E-1713921451No hitNo description
PROSITE profilePS5103214.94813921449IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1313931450IPR016177DNA-binding domain
PfamPF008478.8E-513931441IPR001471AP2/ERF domain
PROSITE profilePS5103211.81216061672IPR001471AP2/ERF domain
CDDcd000186.04E-1116151673No hitNo description
SMARTSM003808.4E-816161678IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1016171673IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-916171673IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2061 aa     Download sequence    Send to blast
MDNIVKPTGS EVSEAEAAPA VHCSDVELKP VHSMFELGES DLKVEHENET LVASPSVSSN  60
SVASNLLSSR ARTAVWRKKI DPGIGAPVEV GQKILEFSTP AVATQIATAV APRQRVFHED  120
SRPGSSSTLP VTLPVAYRPL PPASGLMALI PNLLTLAPDI QLPSPGLSPL PANLFLYSPG  180
LPLTSTGHRR IPAAPSNSTL VPGCSVPQSL TNISRVPSRS PQASGTDLKA RSGHMCHSSR  240
QSCSQYCLQG YKFCLWHILE DPSAPYKQCD FVEYPSRERC RFPVSLKSEN TRFCQMHKQV  300
DGFGINPVTL KNQQSMEHPP LGEFSVLVLA AAVAHQMEIV APPKLWTSLF VNQLPAVVPP  360
SDTVSAKEEH GTPLFQRSTS GKKAASLVQS DPKPAETVPH TNSKQVSRRT HGGLNLKDDG  420
RGTGSTTGFS TKVCVECNLD NVSCRATGCG YQDFTLVGNA QLKIGSNSTK VANELENFRA  480
QLGDRLSSHG ISLPYTMPSG EGKAGIDHGF CGGCRGLRRS GSPHHDKVVG PITAGQVFAN  540
GAPTNRRAHG ASSVSCLVDI GPIELNKIGL MCSSQHLTGL LNGKRSYEQL SILPAIDFGG  600
LDMATMGVRC GPREPRAILG LAIKRKSKVQ TPRDSSSMGR GQGRRVFFSR FVGVRKRPWG  660
AYGAEIRTPE GKRLWLGTFT TEEAAARAYD DAARIFRGKS AVTNFVQGSE FDFGMNSPFA  720
VGSSSTSNEE DTVSDCPGVK KRSALNTKKE KDSELVQLGI VQSNPTNRDR IGTRNQSDSF  780
GSPIETINLL GGLETNFKES VKSLGATSEG ANRSRIGNLK VPGGLLKDRS GRKISQKGTG  840
QVASSKKDGK FDLPSWSEKR LDEDTSGPDR LLLLSNFAIS QEGMEMEEGL DFSKNQSKEH  900
RACTASTVAT GDSRDSDEES DGASDVEPGL DVDSGLQVKM GEAMGEKGKY AELSISAELS  960
EEEKQQLLDL GEGDPEFRLT GVRKSQSGRF EATIYDRTTR KKVYVGTYSS ILEAARARDL  1020
KVLELGSIST LNFPDMRAIQ ESRNSKASGE CSKKKPKAQD IAQSFKKIRL ASHNKSDTDI  1080
NKVLKRKVSD SEKESGSSIV KSLKCKLTKP SLESANCKPY NGSKSMETDC KDAVKAPNKK  1140
SCIAKAPRSS MSSGHEKLGN EVTETASHKV KRKSEEFRKT EVESEKERLK PKKQKVEEVE  1200
EISASAKRRR IPSEKVKANI GASDAAAPAA KEAAKNNDTV KQEFCVVGQG SRSTQRALRK  1260
SNMYRTFADS FVESDYARVY KTTSKRRAML DKEGRKLDSL STNPSSEKSP ASSPKETTIP  1320
SKSRRVKKPQ EEEDEGKDKA FEERSGQVSK KPSPSKSKRA PVADEEEQPV SRSQSADKSS  1380
AKSSGKRRSQ RNFMGVQATP SGRFKAKIYV PKTKKHIYIG IFDTPEEAAH AYDEVAYRKR  1440
GATAPLNFPE AFHAKIKAKQ PIKKVLIQLT DAGDFEAMCY DPKAKDYHSV GVFSSVDGAR  1500
RAGAREAATL DCSNSEASDK DNEDGDGDGE SWSGKNDSVS DSKPMKEKRC KPSYSENAGL  1560
PVTRDVEGES DEDDVVVVEQ SQKESVRSMR SKKGTFARAA TNKKPSRRGN MTRRADFRGV  1620
YCNGHKFQSI YYNPATKKHT YLGTFLTAEE AARAHDQVAF AQFGLEAKLN LPEEIETLRR  1680
TVKVVGRNAV LINNSKSKEP EEDGEEEKED GADSRSSSPV ADLNDMENTE VPIDITRADV  1740
LEDEDDELSS PLSQAPSIPS GAKPSKLVST KSNSFKGNFL DIVLKENNDE DLCNATIADR  1800
TGDAKSSEKP SAGMKPNAGV CGPAAEDSNV LGQQGNREKE GGDDLRLGAD AEEKTGRRVS  1860
RRKMYRASRI GIPGSALGEI VRFPSEKDKA NELQEEKDGW LGEHHLPEGQ RWASVEEKKK  1920
VQDGSSQQLQ LRASGDTSLK TSDVEGSAES VPQKNKNEER EAGPVMPLFD VLAGEFLKAS  1980
IVLETAEADE GKCQFEKEGE KSMPRGSEAY ATCDKVMKDG FLKNEPVKVP KDETDITESL  2040
VEDQSSVTSS DNVGVASVDG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14639705571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112061210KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182793e-36protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381659.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381660.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381661.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381662.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381663.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381664.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381665.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381666.10.0uncharacterized protein LOC112285222 isoform X1
RefseqXP_024381667.10.0uncharacterized protein LOC112285222 isoform X1
TrEMBLA0A2K1KC180.0A0A2K1KC18_PHYPA; Uncharacterized protein
STRINGPP1S2_692V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-12ERF family protein