PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_17700V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 1770aa    MW: 192355 Da    PI: 8.5172
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_17700V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.3e-13358407155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s++ GVr ++ +g + AeIr p       kr +lg+f t+e Aa+a++ a++ ++g
  Pp3c7_17700V3.7.p 358 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 407
                        6899******.**********8.....55**********************98887 PP
2AP225.33.7e-08689734453
                AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                        +GVr    +gr++A I+d ++   rk++++g++ +  eAa+a++   ++l
  Pp3c7_17700V3.7.p 689 TGVRKSQ-SGRFEATIYDRTT---RKKVYVGTYSSILEAARARDLKVLEL 734
                        69*9655.8*********533...5*******************988776 PP
3AP232.22.7e-1011031150455
                AP2    4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                          GV   + +gr+ A I++p++   +k++++g f+t+eeAa a+++ + +++g
  Pp3c7_17700V3.7.p 1103 MGVQATP-SGRFKAKIYVPKT---KKHIYIGIFDTPEEAAHAYDEVAYRKRG 1150
                         6887778.7*********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-14358414No hitNo description
SuperFamilySSF541711.05E-15358415IPR016177DNA-binding domain
PfamPF008474.5E-7358402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-23359415IPR001471AP2/ERF domain
SMARTSM003807.8E-28359421IPR001471AP2/ERF domain
PROSITE profilePS5103220.85359415IPR001471AP2/ERF domain
PRINTSPR003679.1E-6360371IPR001471AP2/ERF domain
PRINTSPR003679.1E-6381397IPR001471AP2/ERF domain
SMARTSM003801.3E-4685749IPR001471AP2/ERF domain
PROSITE profilePS5103211.43687743IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-9689744IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-8689744IPR016177DNA-binding domain
CDDcd000182.95E-11690744No hitNo description
Gene3DG3DSA:3.30.730.101.5E-1611011159IPR001471AP2/ERF domain
CDDcd000184.26E-1711011160No hitNo description
PROSITE profilePS5103214.94811011158IPR001471AP2/ERF domain
SMARTSM003801.9E-1411011164IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1311021159IPR016177DNA-binding domain
PfamPF008477.4E-511021150IPR001471AP2/ERF domain
PROSITE profilePS5103211.81213151381IPR001471AP2/ERF domain
CDDcd000185.07E-1113241382No hitNo description
SMARTSM003808.4E-813251387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1013261382IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-913261382IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1770 aa     Download sequence    Send to blast
MFCQMHKQVD GFGINPVTLK NQQSMEHPPL GEFSVLVLAA AVAHQMEIVA PPKLWTSLFV  60
NQLPAVVPPS DTVSAKEEHG TPLFQRSTSG KKAASLVQSD PKPAETVPHT NSKQVSRRTH  120
GGLNLKDDGR GTGSTTGFST KVCVECNLDN VSCRATGCGY QDFTLVGNAQ LKIGSNSTKV  180
ANELENFRAQ LGDRLSSHGI SLPYTMPSGE GKAGIDHGFC GGCRGLRRSG SPHHDKVVGP  240
ITAGQVFANG APTNRRAHGA SSVSCLVDIG PIELNKIGLM CSSQHLTGLL NGKRSYEQLS  300
ILPAIDFGGL DMATMGVRCG PREPRAILGL AIKRKSKVQT PRDSSSMGRG QGRRVFFSRF  360
VGVRKRPWGA YGAEIRTPEG KRLWLGTFTT EEAAARAYDD AARIFRGKSA VTNFVQGSEF  420
DFGMNSPFAV GSSSTSNEED TVSDCPGVKK RSALNTKKEK DSELVQLGIV QSNPTNRDRI  480
GTRNQSDSFG SPIETINLLG GLETNFKESV KSLGATSEGA NRSRIGNLKV PGGLLKDRSG  540
RKISQKGTGQ VASSKKDGKF DLPSWSEKRL DEDTSGPDRL LLLSNFAISQ EGMEMEEGLD  600
FSKNQSKEHR ACTASTVATG DSRDSDEESD GASDVEPGLD VDSGLQVKMG EAMGEKGKYA  660
ELSISAELSE EEKQQLLDLG EGDPEFRLTG VRKSQSGRFE ATIYDRTTRK KVYVGTYSSI  720
LEAARARDLK VLELGSISTL NFPDMRAIQE SRNSKASGEC SKKKPKAQDI AQSFKKIRLA  780
SHNKSDTDIN KVLKRKVSDS EKESGSSIVK SLKCKLTKPS LESANCKPYN GSKSMETDCK  840
DAVKAPNKKS CIAKAPRSSM SSGHEKLGNE VTETASHKVK RKSEEFRKTE VESEKERLKP  900
KKQKVEEVEE ISASAKRRRI PSEKVKANIG ASDAAAPAAK EAAKNNDTVK QEFCVVGQGS  960
RSTQRALRKS NMYRTFADSF VESDYARVYK TTSKRRAMLD KEGRKLDSLS TNPSSEKSPA  1020
SSPKETTIPS KSRRVKKPQE EEDEGKDKAF EERSGQVSKK PSPSKSKRAP VADEEEQPVS  1080
RSQSADKSSA KSSGKRRSQR NFMGVQATPS GRFKAKIYVP KTKKHIYIGI FDTPEEAAHA  1140
YDEVAYRKRG ATAPLNFPEA FHAKIKAKQP IKKVLIQLTD AGDFEAMCYD PKAKDYHSVG  1200
VFSSVDGARR AGAREAATLD CSNSEASDKD NEDGDGDGES WSGKNDSVSD SKPMKEKRCK  1260
PSYSENAGLP VTRDVEGESD EDDVVVVEQS QKESVRSMRS KKGTFARAAT NKKPSRRGNM  1320
TRRADFRGVY CNGHKFQSIY YNPATKKHTY LGTFLTAEEA ARAHDQVAFA QFGLEAKLNL  1380
PEEIETLRRT VKVVGRNAVL INNSKSKEPE EDGEEEKEDG ADSRSSSPVA DLNDMENTEV  1440
PIDITRADVL EDEDDELSSP LSQAPSIPSG AKPSKLVSTK SNSFKGNFLD IVLKENNDED  1500
LCNATIADRT GDAKSSEKPS AGMKPNAGVC GPAAEDSNVL GQQGNREKEG GDDLRLGADA  1560
EEKTGRRVSR RKMYRASRIG IPGSALGEIV RFPSEKDKAN ELQEEKDGWL GEHHLPEGQR  1620
WASVEEKKKV QDGSSQQLQL RASGDTSLKT SDVEGSAESV PQKNKNEERE AGPVMPLFDV  1680
LAGEFLKASI VLETAEADEG KCQFEKEGEK SMPRGSEAYA TCDKVMKDGF LKNEPVKVPK  1740
DETDITESLV EDQSSVTSSD NVGVASVDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14348414571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915919KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182793e-36protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381668.10.0uncharacterized protein LOC112285222 isoform X2
TrEMBLA0A2K1KC180.0A0A2K1KC18_PHYPA; Uncharacterized protein
STRINGPP1S2_692V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-12ERF family protein