PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_16800V3.5.p

Common Name

PHYPADRAFT_64527

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2205aa MW: 243195 Da PI: 6.43

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_16800V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	962	1003	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E +++v+ ++++ ++ +k Ia++++ +t +c+++++ Pp3c7_16800V3.5.p 962 PWTEVEKKIFVEKFALHYKN-FKEIASHLQ-YKTTADCIEYYYR 1003 8***************99.*****.9********96 PP
2	Myb_DNA-binding	38.2	3.4e-12	1188	1230	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE el+ av+ +G++ +++Ia+++g ++ qcks++ k Pp3c7_16800V3.5.p 1188 QWTDEERELFTSAVATHGKD-FRLIAAHVG-SKSQSQCKSFFSKT 1230 6***************99.*****.********9886 PP
3	Myb_DNA-binding	30.1	1.2e-09	1515	1556	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++ +++G++ W++ + ++ ++l q+k ++q+ Pp3c7_16800V3.5.p 1515 SWTQEEKEKFAVILQEHGKD-WTLLHQSLP-SKSLTQIKTYFQN 1556 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-11	947	1008	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-4	956	1004	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.008	958	1009	IPR017884	SANT domain
SMART	SM00717	4.7E-9	959	1007	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-6	961	1003	IPR001005	SANT/Myb domain
CDD	cd00167	7.87E-7	962	1004	No hit	No description
SuperFamily	SSF46689	5.24E-12	1175	1236	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.436	1184	1235	IPR017884	SANT domain
SMART	SM00717	4.9E-11	1185	1233	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-8	1187	1232	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-10	1188	1229	IPR001005	SANT/Myb domain
CDD	cd00167	7.85E-8	1189	1227	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-7	1508	1559	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.73E-10	1510	1560	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.54	1511	1562	IPR017884	SANT domain
SMART	SM00717	3.0E-8	1512	1560	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-8	1515	1556	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-5	1515	1558	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2205 aa Download sequence Send to blast
MDKEVKEVLQ SQVIALKEGK MEASLQCLSP LVQPAPRYES SSDRVHLPAT MHSVMAETTN 60 DAEDRFTRPR SASFASSVQP KSANITRTEP PIDRKTIRHI GRFEVRRGRF DNWDDHDGEN 120 LSWLSSTRDL RNSDEARRGK DDRVLGRSDD IDRKEERGLR RLDERSERDE MRRVRSDVFG 180 EVSSVRGLTI MDEQERDRDR EYRQDGGSGE GVGRMMQRKP SFSGPMAQFG SGKGWGVGDK 240 KSELSRFERY GTGNRDGSRA EYEGNSRDLG FPYGWRRERS QSSAIARHSS FTSGNRSFGE 300 HGGKGSLSVS SGHDSPFVTG LSSNQDSDHP SPSKRPRLGW GQGLAKYEKK VGDTEDVSPS 360 VVRFDSKKDG DGEIHSNAEE VKKGNVSHEK LPEATPSGVS SSDLQKPCPM VGIQPEDGEG 420 FSDGLEKREK NENKSFLWRD HVRREESGEN SNSCALLGII PRIGDVKNPV VTEEMQRLEQ 480 IPASPVRMKD SANSTEEQKN ESKCPLSNGI EEPELNGLDP VSHVLVEDSE SREKNDEVTA 540 SELQESESLG RKNQSLVPSV SKVEWDFKCS AHAKTTEVLG DSHQTGMLFT ETLPRSVDTV 600 IRPSCSELSL TLVPVRLNKS SICSEKDTIS TVALSRRTDG EDETILSRES VPIPIQEKAI 660 ELMPECVVPE SVNIGEKIKV EGVLELEPAR KLSKSMDLDE DEDVRGVPLE SADLNIDEGV 720 VVVSSRSSPL SAVSEKSSYY EEQSDYEVAT GGSSLQEHSL SMEESLMMEN KENARLAGAS 780 FLHLLPENLK REPYQQLYDS PTEALVWQHN VETHKKIEDM LLKKISEKHH FHKFKERILT 840 LRFIALKEAW KQEQKGLSGL RNRPKSVSRW DNEGRSSHGP PSQRFSLRLR PPSMNRLDSE 900 SDAAKAMKKL MKEPRVEALR PVLKMPAMIL DEKERASRRF VSRNALVEDP VTVEMERKTL 960 NPWTEVEKKI FVEKFALHYK NFKEIASHLQ YKTTADCIEY YYRNQKSESF SKSKEGGHSK 1020 SLGDRTKPST FLTPTAVAIK RNLKANCATV EALNVATMNM KVSQLSSQVS EHAKTMTSSN 1080 HSLSMPADAK IRKSHLKESK VLEVILPSGT SVETVTSSLI STPCSVSSTA VPLTDECKEK 1140 GFVKERVGRG PSATRSSHSE QHLAGPKSTR STYLRRMSSK AATQEGSQWT DEERELFTSA 1200 VATHGKDFRL IAAHVGSKSQ SQCKSFFSKT RKRLGLDELV EQFQANEAAA MLVQSFRHDA 1260 ELLQEVKQIS TAQMDASAGV VGHSVDELSD TAAAVSTLER LKEQSKCFAN DMSDLSLVAD 1320 AAAAMEEMSL MKSESPSRDF SNNKQLLEIA ELAHEHLKVE PSNIAAIRQE GEDDSETTKS 1380 DDSCQVDTQA EIDIVVDQAA AALLGMSETL VDNSGLKRSK SEAKVGTRTS PVSVFSRSQS 1440 ARLSTSSPPL HAVFETNVCL TSGRNSRQAK ERVNSTTSCK PTTRDRPQDM QDAQSGRKGK 1500 DTGGGEPKLR REPTSWTQEE KEKFAVILQE HGKDWTLLHQ SLPSKSLTQI KTYFQNSKAR 1560 SRLPAVVKLM NVVRRDGGSR KRKAEGYESS RKAAELGPPF KQKVRANAAS HEFDDTTQEE 1620 DNLFRSASVS GGTGVGVDIL AYAARFGTYP GQPINQDTLS MNGMQHLARP MPTSNTYVQE 1680 SKQDGHQAFR SGARPVLPTP LGIRPHVGDG LLRQLSSSVP SKACSPDLQV LSSNVGPQAE 1740 PPAAIHQVAQ QVQQMLAQQQ HLQKQLALLI QQQAALPQAL LPQHQQATEQ TLQSARPLEE 1800 KLQQVVQQLQ QQQALAQSQE GEIHNHMHFQ YQQAPHGRGI LKVKPIREAI SNPFADLAIL 1860 PSPDVLQNQH ISRNQEIQLQ QQDHSLSLGM RTIPSTAGGS TAGLHENHSK TLDLQDSDTD 1920 TDTDCEGMGS KQMVAEDSHQ RMSVVHSSSS GQQQGAAQST TSTLSSDSEQ VKSWDVKLFG 1980 QSLLSKPTAL PSTMPRITGS SIQEFVKPNI SSPVATVTYP AGSLSKEFKP SESLPSAFGR 2040 VGASSSVAEG QPTSWAGMSS LLEKLGVYGA WSTTSSLQLS EVTELSRKEP DSEGTQDAVT 2100 SMPTIPDRQH TDNQDLVLTS EQGPQRDDGH HDGERELSAC QSETRGRETT VEETPFLGRI 2160 QNCSSENVVS LDAGQCQIGL DSALPASHMK SFPTVSAEPG HWGE*

Sequence ? help Back to Top

Protein Sequence Length: 2205 aa Download sequence Send to blast

MDKEVKEVLQ SQVIALKEGK MEASLQCLSP LVQPAPRYES SSDRVHLPAT MHSVMAETTN  60
DAEDRFTRPR SASFASSVQP KSANITRTEP PIDRKTIRHI GRFEVRRGRF DNWDDHDGEN  120
LSWLSSTRDL RNSDEARRGK DDRVLGRSDD IDRKEERGLR RLDERSERDE MRRVRSDVFG  180
EVSSVRGLTI MDEQERDRDR EYRQDGGSGE GVGRMMQRKP SFSGPMAQFG SGKGWGVGDK  240
KSELSRFERY GTGNRDGSRA EYEGNSRDLG FPYGWRRERS QSSAIARHSS FTSGNRSFGE  300
HGGKGSLSVS SGHDSPFVTG LSSNQDSDHP SPSKRPRLGW GQGLAKYEKK VGDTEDVSPS  360
VVRFDSKKDG DGEIHSNAEE VKKGNVSHEK LPEATPSGVS SSDLQKPCPM VGIQPEDGEG  420
FSDGLEKREK NENKSFLWRD HVRREESGEN SNSCALLGII PRIGDVKNPV VTEEMQRLEQ  480
IPASPVRMKD SANSTEEQKN ESKCPLSNGI EEPELNGLDP VSHVLVEDSE SREKNDEVTA  540
SELQESESLG RKNQSLVPSV SKVEWDFKCS AHAKTTEVLG DSHQTGMLFT ETLPRSVDTV  600
IRPSCSELSL TLVPVRLNKS SICSEKDTIS TVALSRRTDG EDETILSRES VPIPIQEKAI  660
ELMPECVVPE SVNIGEKIKV EGVLELEPAR KLSKSMDLDE DEDVRGVPLE SADLNIDEGV  720
VVVSSRSSPL SAVSEKSSYY EEQSDYEVAT GGSSLQEHSL SMEESLMMEN KENARLAGAS  780
FLHLLPENLK REPYQQLYDS PTEALVWQHN VETHKKIEDM LLKKISEKHH FHKFKERILT  840
LRFIALKEAW KQEQKGLSGL RNRPKSVSRW DNEGRSSHGP PSQRFSLRLR PPSMNRLDSE  900
SDAAKAMKKL MKEPRVEALR PVLKMPAMIL DEKERASRRF VSRNALVEDP VTVEMERKTL  960
NPWTEVEKKI FVEKFALHYK NFKEIASHLQ YKTTADCIEY YYRNQKSESF SKSKEGGHSK  1020
SLGDRTKPST FLTPTAVAIK RNLKANCATV EALNVATMNM KVSQLSSQVS EHAKTMTSSN  1080
HSLSMPADAK IRKSHLKESK VLEVILPSGT SVETVTSSLI STPCSVSSTA VPLTDECKEK  1140
GFVKERVGRG PSATRSSHSE QHLAGPKSTR STYLRRMSSK AATQEGSQWT DEERELFTSA  1200
VATHGKDFRL IAAHVGSKSQ SQCKSFFSKT RKRLGLDELV EQFQANEAAA MLVQSFRHDA  1260
ELLQEVKQIS TAQMDASAGV VGHSVDELSD TAAAVSTLER LKEQSKCFAN DMSDLSLVAD  1320
AAAAMEEMSL MKSESPSRDF SNNKQLLEIA ELAHEHLKVE PSNIAAIRQE GEDDSETTKS  1380
DDSCQVDTQA EIDIVVDQAA AALLGMSETL VDNSGLKRSK SEAKVGTRTS PVSVFSRSQS  1440
ARLSTSSPPL HAVFETNVCL TSGRNSRQAK ERVNSTTSCK PTTRDRPQDM QDAQSGRKGK  1500
DTGGGEPKLR REPTSWTQEE KEKFAVILQE HGKDWTLLHQ SLPSKSLTQI KTYFQNSKAR  1560
SRLPAVVKLM NVVRRDGGSR KRKAEGYESS RKAAELGPPF KQKVRANAAS HEFDDTTQEE  1620
DNLFRSASVS GGTGVGVDIL AYAARFGTYP GQPINQDTLS MNGMQHLARP MPTSNTYVQE  1680
SKQDGHQAFR SGARPVLPTP LGIRPHVGDG LLRQLSSSVP SKACSPDLQV LSSNVGPQAE  1740
PPAAIHQVAQ QVQQMLAQQQ HLQKQLALLI QQQAALPQAL LPQHQQATEQ TLQSARPLEE  1800
KLQQVVQQLQ QQQALAQSQE GEIHNHMHFQ YQQAPHGRGI LKVKPIREAI SNPFADLAIL  1860
PSPDVLQNQH ISRNQEIQLQ QQDHSLSLGM RTIPSTAGGS TAGLHENHSK TLDLQDSDTD  1920
TDTDCEGMGS KQMVAEDSHQ RMSVVHSSSS GQQQGAAQST TSTLSSDSEQ VKSWDVKLFG  1980
QSLLSKPTAL PSTMPRITGS SIQEFVKPNI SSPVATVTYP AGSLSKEFKP SESLPSAFGR  2040
VGASSSVAEG QPTSWAGMSS LLEKLGVYGA WSTTSSLQLS EVTELSRKEP DSEGTQDAVT  2100
SMPTIPDRQH TDNQDLVLTS EQGPQRDDGH HDGERELSAC QSETRGRETT VEETPFLGRI  2160
QNCSSENVVS LDAGQCQIGL DSALPASHMK SFPTVSAEPG HWGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-17	918	1010	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-17	918	1010	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16835	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380079.1	0.0	uncharacterized protein LOC112284485 isoform X3
TrEMBL	A0A2K1KBX4	0.0	A0A2K1KBX4_PHYPA; Uncharacterized protein
STRING	PP1S2_775V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-40	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_16800V3.5.p
Entrez Gene	5914945

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]