PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_16800V3.4.p

Common Name

PHYPADRAFT_64527

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2208aa MW: 243536 Da PI: 6.43

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_16800V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	962	1003	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E +++v+ ++++ ++ +k Ia++++ +t +c+++++ Pp3c7_16800V3.4.p 962 PWTEVEKKIFVEKFALHYKN-FKEIASHLQ-YKTTADCIEYYYR 1003 8***************99.*****.9********96 PP
2	Myb_DNA-binding	38.2	3.4e-12	1188	1230	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE el+ av+ +G++ +++Ia+++g ++ qcks++ k Pp3c7_16800V3.4.p 1188 QWTDEERELFTSAVATHGKD-FRLIAAHVG-SKSQSQCKSFFSKT 1230 6***************99.*****.********9886 PP
3	Myb_DNA-binding	30	1.2e-09	1518	1559	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++ +++G++ W++ + ++ ++l q+k ++q+ Pp3c7_16800V3.4.p 1518 SWTQEEKEKFAVILQEHGKD-WTLLHQSLP-SKSLTQIKTYFQN 1559 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-11	947	1008	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-4	956	1004	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.008	958	1009	IPR017884	SANT domain
SMART	SM00717	4.7E-9	959	1007	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-6	961	1003	IPR001005	SANT/Myb domain
CDD	cd00167	7.88E-7	962	1004	No hit	No description
SuperFamily	SSF46689	5.24E-12	1175	1236	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.436	1184	1235	IPR017884	SANT domain
SMART	SM00717	4.9E-11	1185	1233	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-8	1187	1232	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-10	1188	1229	IPR001005	SANT/Myb domain
CDD	cd00167	7.86E-8	1189	1227	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-7	1511	1562	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.73E-10	1513	1563	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.54	1514	1565	IPR017884	SANT domain
SMART	SM00717	3.0E-8	1515	1563	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-8	1518	1559	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-5	1518	1561	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2208 aa Download sequence Send to blast
MDKEVKEVLQ SQVIALKEGK MEASLQCLSP LVQPAPRYES SSDRVHLPAT MHSVMAETTN 60 DAEDRFTRPR SASFASSVQP KSANITRTEP PIDRKTIRHI GRFEVRRGRF DNWDDHDGEN 120 LSWLSSTRDL RNSDEARRGK DDRVLGRSDD IDRKEERGLR RLDERSERDE MRRVRSDVFG 180 EVSSVRGLTI MDEQERDRDR EYRQDGGSGE GVGRMMQRKP SFSGPMAQFG SGKGWGVGDK 240 KSELSRFERY GTGNRDGSRA EYEGNSRDLG FPYGWRRERS QSSAIARHSS FTSGNRSFGE 300 HGGKGSLSVS SGHDSPFVTG LSSNQDSDHP SPSKRPRLGW GQGLAKYEKK VGDTEDVSPS 360 VVRFDSKKDG DGEIHSNAEE VKKGNVSHEK LPEATPSGVS SSDLQKPCPM VGIQPEDGEG 420 FSDGLEKREK NENKSFLWRD HVRREESGEN SNSCALLGII PRIGDVKNPV VTEEMQRLEQ 480 IPASPVRMKD SANSTEEQKN ESKCPLSNGI EEPELNGLDP VSHVLVEDSE SREKNDEVTA 540 SELQESESLG RKNQSLVPSV SKVEWDFKCS AHAKTTEVLG DSHQTGMLFT ETLPRSVDTV 600 IRPSCSELSL TLVPVRLNKS SICSEKDTIS TVALSRRTDG EDETILSRES VPIPIQEKAI 660 ELMPECVVPE SVNIGEKIKV EGVLELEPAR KLSKSMDLDE DEDVRGVPLE SADLNIDEGV 720 VVVSSRSSPL SAVSEKSSYY EEQSDYEVAT GGSSLQEHSL SMEESLMMEN KENARLAGAS 780 FLHLLPENLK REPYQQLYDS PTEALVWQHN VETHKKIEDM LLKKISEKHH FHKFKERILT 840 LRFIALKEAW KQEQKGLSGL RNRPKSVSRW DNEGRSSHGP PSQRFSLRLR PPSMNRLDSE 900 SDAAKAMKKL MKEPRVEALR PVLKMPAMIL DEKERASRRF VSRNALVEDP VTVEMERKTL 960 NPWTEVEKKI FVEKFALHYK NFKEIASHLQ YKTTADCIEY YYRNQKSESF SKSKEGGHSK 1020 SLGDRTKPST FLTPTAVAIK RNLKANCATV EALNVATMNM KVSQLSSQVS EHAKTMTSSN 1080 HSLSMPADAK IRKSHLKESK VLEVILPSGT SVETVTSSLI STPCSVSSTA VPLTDECKEK 1140 GFVKERVGRG PSATRSSHSE QHLAGPKSTR STYLRRMSSK AATQEGSQWT DEERELFTSA 1200 VATHGKDFRL IAAHVGSKSQ SQCKSFFSKT RKRLGLDELV EQFQANEAAA MLVQSFRHDA 1260 ELLQEVKQIS TAQNVQMDAS AGVVGHSVDE LSDTAAAVST LERLKEQSKC FANDMSDLSL 1320 VADAAAAMEE MSLMKSESPS RDFSNNKQLL EIAELAHEHL KVEPSNIAAI RQEGEDDSET 1380 TKSDDSCQVD TQAEIDIVVD QAAAALLGMS ETLVDNSGLK RSKSEAKVGT RTSPVSVFSR 1440 SQSARLSTSS PPLHAVFETN VCLTSGRNSR QAKERVNSTT SCKPTTRDRP QDMQDAQSGR 1500 KGKDTGGGEP KLRREPTSWT QEEKEKFAVI LQEHGKDWTL LHQSLPSKSL TQIKTYFQNS 1560 KARSRLPAVV KLMNVVRRDG GSRKRKAEGY ESSRKAAELG PPFKQKVRAN AASHEFDDTT 1620 QEEDNLFRSA SVSGGTGVGV DILAYAARFG TYPGQPINQD TLSMNGMQHL ARPMPTSNTY 1680 VQESKQDGHQ AFRSGARPVL PTPLGIRPHV GDGLLRQLSS SVPSKACSPD LQVLSSNVGP 1740 QAEPPAAIHQ VAQQVQQMLA QQQHLQKQLA LLIQQQAALP QALLPQHQQA TEQTLQSARP 1800 LEEKLQQVVQ QLQQQQALAQ SQEGEIHNHM HFQYQQAPHG RGILKVKPIR EAISNPFADL 1860 AILPSPDVLQ NQHISRNQEI QLQQQDHSLS LGMRTIPSTA GGSTAGLHEN HSKTLDLQDS 1920 DTDTDTDCEG MGSKQMVAED SHQRMSVVHS SSSGQQQGAA QSTTSTLSSD SEQVKSWDVK 1980 LFGQSLLSKP TALPSTMPRI TGSSIQEFVK PNISSPVATV TYPAGSLSKE FKPSESLPSA 2040 FGRVGASSSV AEGQPTSWAG MSSLLEKLGV YGAWSTTSSL QLSEVTELSR KEPDSEGTQD 2100 AVTSMPTIPD RQHTDNQDLV LTSEQGPQRD DGHHDGEREL SACQSETRGR ETTVEETPFL 2160 GRIQNCSSEN VVSLDAGQCQ IGLDSALPAS HMKSFPTVSA EPGHWGE*

Sequence ? help Back to Top

Protein Sequence Length: 2208 aa Download sequence Send to blast

MDKEVKEVLQ SQVIALKEGK MEASLQCLSP LVQPAPRYES SSDRVHLPAT MHSVMAETTN  60
DAEDRFTRPR SASFASSVQP KSANITRTEP PIDRKTIRHI GRFEVRRGRF DNWDDHDGEN  120
LSWLSSTRDL RNSDEARRGK DDRVLGRSDD IDRKEERGLR RLDERSERDE MRRVRSDVFG  180
EVSSVRGLTI MDEQERDRDR EYRQDGGSGE GVGRMMQRKP SFSGPMAQFG SGKGWGVGDK  240
KSELSRFERY GTGNRDGSRA EYEGNSRDLG FPYGWRRERS QSSAIARHSS FTSGNRSFGE  300
HGGKGSLSVS SGHDSPFVTG LSSNQDSDHP SPSKRPRLGW GQGLAKYEKK VGDTEDVSPS  360
VVRFDSKKDG DGEIHSNAEE VKKGNVSHEK LPEATPSGVS SSDLQKPCPM VGIQPEDGEG  420
FSDGLEKREK NENKSFLWRD HVRREESGEN SNSCALLGII PRIGDVKNPV VTEEMQRLEQ  480
IPASPVRMKD SANSTEEQKN ESKCPLSNGI EEPELNGLDP VSHVLVEDSE SREKNDEVTA  540
SELQESESLG RKNQSLVPSV SKVEWDFKCS AHAKTTEVLG DSHQTGMLFT ETLPRSVDTV  600
IRPSCSELSL TLVPVRLNKS SICSEKDTIS TVALSRRTDG EDETILSRES VPIPIQEKAI  660
ELMPECVVPE SVNIGEKIKV EGVLELEPAR KLSKSMDLDE DEDVRGVPLE SADLNIDEGV  720
VVVSSRSSPL SAVSEKSSYY EEQSDYEVAT GGSSLQEHSL SMEESLMMEN KENARLAGAS  780
FLHLLPENLK REPYQQLYDS PTEALVWQHN VETHKKIEDM LLKKISEKHH FHKFKERILT  840
LRFIALKEAW KQEQKGLSGL RNRPKSVSRW DNEGRSSHGP PSQRFSLRLR PPSMNRLDSE  900
SDAAKAMKKL MKEPRVEALR PVLKMPAMIL DEKERASRRF VSRNALVEDP VTVEMERKTL  960
NPWTEVEKKI FVEKFALHYK NFKEIASHLQ YKTTADCIEY YYRNQKSESF SKSKEGGHSK  1020
SLGDRTKPST FLTPTAVAIK RNLKANCATV EALNVATMNM KVSQLSSQVS EHAKTMTSSN  1080
HSLSMPADAK IRKSHLKESK VLEVILPSGT SVETVTSSLI STPCSVSSTA VPLTDECKEK  1140
GFVKERVGRG PSATRSSHSE QHLAGPKSTR STYLRRMSSK AATQEGSQWT DEERELFTSA  1200
VATHGKDFRL IAAHVGSKSQ SQCKSFFSKT RKRLGLDELV EQFQANEAAA MLVQSFRHDA  1260
ELLQEVKQIS TAQNVQMDAS AGVVGHSVDE LSDTAAAVST LERLKEQSKC FANDMSDLSL  1320
VADAAAAMEE MSLMKSESPS RDFSNNKQLL EIAELAHEHL KVEPSNIAAI RQEGEDDSET  1380
TKSDDSCQVD TQAEIDIVVD QAAAALLGMS ETLVDNSGLK RSKSEAKVGT RTSPVSVFSR  1440
SQSARLSTSS PPLHAVFETN VCLTSGRNSR QAKERVNSTT SCKPTTRDRP QDMQDAQSGR  1500
KGKDTGGGEP KLRREPTSWT QEEKEKFAVI LQEHGKDWTL LHQSLPSKSL TQIKTYFQNS  1560
KARSRLPAVV KLMNVVRRDG GSRKRKAEGY ESSRKAAELG PPFKQKVRAN AASHEFDDTT  1620
QEEDNLFRSA SVSGGTGVGV DILAYAARFG TYPGQPINQD TLSMNGMQHL ARPMPTSNTY  1680
VQESKQDGHQ AFRSGARPVL PTPLGIRPHV GDGLLRQLSS SVPSKACSPD LQVLSSNVGP  1740
QAEPPAAIHQ VAQQVQQMLA QQQHLQKQLA LLIQQQAALP QALLPQHQQA TEQTLQSARP  1800
LEEKLQQVVQ QLQQQQALAQ SQEGEIHNHM HFQYQQAPHG RGILKVKPIR EAISNPFADL  1860
AILPSPDVLQ NQHISRNQEI QLQQQDHSLS LGMRTIPSTA GGSTAGLHEN HSKTLDLQDS  1920
DTDTDTDCEG MGSKQMVAED SHQRMSVVHS SSSGQQQGAA QSTTSTLSSD SEQVKSWDVK  1980
LFGQSLLSKP TALPSTMPRI TGSSIQEFVK PNISSPVATV TYPAGSLSKE FKPSESLPSA  2040
FGRVGASSSV AEGQPTSWAG MSSLLEKLGV YGAWSTTSSL QLSEVTELSR KEPDSEGTQD  2100
AVTSMPTIPD RQHTDNQDLV LTSEQGPQRD DGHHDGEREL SACQSETRGR ETTVEETPFL  2160
GRIQNCSSEN VVSLDAGQCQ IGLDSALPAS HMKSFPTVSA EPGHWGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-17	918	1010	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-17	918	1010	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16835	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380077.1	0.0	uncharacterized protein LOC112284485 isoform X2
TrEMBL	A0A2K1KBX4	0.0	A0A2K1KBX4_PHYPA; Uncharacterized protein
STRING	PP1S2_775V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-40	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_16800V3.4.p
Entrez Gene	5914945

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]