PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_16800V3.3.p

Common Name

PHYPADRAFT_64527

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2119aa MW: 233767 Da PI: 6.5611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_16800V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.4e-08	876	917	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E +++v+ ++++ ++ +k Ia++++ +t +c+++++ Pp3c7_16800V3.3.p 876 PWTEVEKKIFVEKFALHYKN-FKEIASHLQ-YKTTADCIEYYYR 917 8***************99.*****.9********96 PP
2	Myb_DNA-binding	38.2	3.3e-12	1102	1144	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE el+ av+ +G++ +++Ia+++g ++ qcks++ k Pp3c7_16800V3.3.p 1102 QWTDEERELFTSAVATHGKD-FRLIAAHVG-SKSQSQCKSFFSKT 1144 6***************99.*****.********9886 PP
3	Myb_DNA-binding	30.1	1.1e-09	1429	1470	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++ +++G++ W++ + ++ ++l q+k ++q+ Pp3c7_16800V3.3.p 1429 SWTQEEKEKFAVILQEHGKD-WTLLHQSLP-SKSLTQIKTYFQN 1470 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-11	861	922	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-4	870	918	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.008	872	923	IPR017884	SANT domain
SMART	SM00717	4.7E-9	873	921	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-6	875	917	IPR001005	SANT/Myb domain
CDD	cd00167	7.53E-7	876	918	No hit	No description
SuperFamily	SSF46689	4.95E-12	1089	1150	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.436	1098	1149	IPR017884	SANT domain
SMART	SM00717	4.9E-11	1099	1147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-8	1101	1146	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-10	1102	1143	IPR001005	SANT/Myb domain
CDD	cd00167	7.51E-8	1103	1141	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-7	1422	1473	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.58E-10	1424	1474	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.54	1425	1476	IPR017884	SANT domain
SMART	SM00717	3.0E-8	1426	1474	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-8	1429	1470	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-5	1429	1472	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2119 aa Download sequence Send to blast
MDKEVKEVLQ SQVIALKEGK MEASLQCLSP LVQPAPRYES SSDRVHLPAT MHSVMAETTN 60 DAEDRFTRPR SASFASSVQP KSANITRTEP PIDRKTIRHI GRFEVRRGRF DNWDDHDGEN 120 LSWLSSTRDL RNSDEARRGK DDRVLGRSDD IDRKEERGLR RLDERSERDE MRRVRSDVFG 180 EVSSVRGLTI MDEQERDRDR EYRQDGGSGE GVGRMMQRKP SFSGPMAQFG SGKGWGVGDK 240 KSELSRFERY GTGNRDGSRA EYEGNSRDLG FPYGWRRERS QSSAIARHSS FTSGNRSFGE 300 HGGKGSLSVS SGHDSPFVTG LSSNQDSDHP SPSKRPRLGW GQGLAKYEKK VGDTEDVSPS 360 VVRFDSKKDG DGEIHSNAEE VKKGNVSHEK LPEATPSGVS SSDLQKPCPM VGIQPEDGEG 420 FSDGLEKREK NENKSFLWRD HVRREESGEN SNSCALLGII PRIGDVKNPV VTEEMQRLEQ 480 IPASPVRMKD SANSTEEQKN ESKCPLSNGI EEPELNGLDP VSHVLVEDSE SREKNDEVTA 540 SELQESESLG RKNQSLVPSV SKVEWDFKCS AHAKTTEVLG DSHQTVNIGE KIKVEGVLEL 600 EPARKLSKSM DLDEDEDVRG VPLESADLNI DEGVVVVSSR SSPLSAVSEK SSYYEEQSDY 660 EVATGGSSLQ EHSLSMEESL MMENKENARL AGASFLHLLP ENLKREPYQQ LYDSPTEALV 720 WQHNVETHKK IEDMLLKKIS EKHHFHKFKE RILTLRFIAL KEAWKQEQKG LSGLRNRPKS 780 VSRWDNEGRS SHGPPSQRFS LRLRPPSMNR LDSESDAAKA MKKLMKEPRV EALRPVLKMP 840 AMILDEKERA SRRFVSRNAL VEDPVTVEME RKTLNPWTEV EKKIFVEKFA LHYKNFKEIA 900 SHLQYKTTAD CIEYYYRNQK SESFSKSKEG GHSKSLGDRT KPSTFLTPTA VAIKRNLKAN 960 CATVEALNVA TMNMKVSQLS SQVSEHAKTM TSSNHSLSMP ADAKIRKSHL KESKVLEVIL 1020 PSGTSVETVT SSLISTPCSV SSTAVPLTDE CKEKGFVKER VGRGPSATRS SHSEQHLAGP 1080 KSTRSTYLRR MSSKAATQEG SQWTDEEREL FTSAVATHGK DFRLIAAHVG SKSQSQCKSF 1140 FSKTRKRLGL DELVEQFQAN EAAAMLVQSF RHDAELLQEV KQISTAQMDA SAGVVGHSVD 1200 ELSDTAAAVS TLERLKEQSK CFANDMSDLS LVADAAAAME EMSLMKSESP SRDFSNNKQL 1260 LEIAELAHEH LKVEPSNIAA IRQEGEDDSE TTKSDDSCQV DTQAEIDIVV DQAAAALLGM 1320 SETLVDNSGL KRSKSEAKVG TRTSPVSVFS RSQSARLSTS SPPLHAVFET NVCLTSGRNS 1380 RQAKERVNST TSCKPTTRDR PQDMQDAQSG RKGKDTGGGE PKLRREPTSW TQEEKEKFAV 1440 ILQEHGKDWT LLHQSLPSKS LTQIKTYFQN SKARSRLPAV VKLMNVVRRD GGSRKRKAEG 1500 YESSRKAAEL GPPFKQKVRA NAASHEFDDT TQEEDNLFRS ASVSGGTGVG VDILAYAARF 1560 GTYPGQPINQ DTLSMNGMQH LARPMPTSNT YVQESKQDGH QAFRSGARPV LPTPLGIRPH 1620 VGDGLLRQLS SSVPSKACSP DLQVLSSNVG PQAEPPAAIH QVAQQVQQML AQQQHLQKQL 1680 ALLIQQQAAL PQALLPQHQQ ATEQTLQSAR PLEEKLQQVV QQLQQQQALA QSQEGEIHNH 1740 MHFQYQQAPH GRGILKVKPI REAISNPFAD LAILPSPDVL QNQHISRNQE IQLQQQDHSL 1800 SLGMRTIPST AGGSTAGLHE NHSKTLDLQD SDTDTDTDCE GMGSKQMVAE DSHQRMSVVH 1860 SSSSGQQQGA AQSTTSTLSS DSEQVKSWDV KLFGQSLLSK PTALPSTMPR ITGSSIQEFV 1920 KPNISSPVAT VTYPAGSLSK EFKPSESLPS AFGRVGASSS VAEGQPTSWA GMSSLLEKLG 1980 VYGAWSTTSS LQLSEVTELS RKEPDSEGTQ DAVTSMPTIP DRQHTDNQDL VLTSEQGPQR 2040 DDGHHDGERE LSACQSETRG RETTVEETPF LGRIQNCSSE NVVSLDAGQC QIGLDSALPA 2100 SHMKSFPTVS AEPGHWGE*

Sequence ? help Back to Top

Protein Sequence Length: 2119 aa Download sequence Send to blast

MDKEVKEVLQ SQVIALKEGK MEASLQCLSP LVQPAPRYES SSDRVHLPAT MHSVMAETTN  60
DAEDRFTRPR SASFASSVQP KSANITRTEP PIDRKTIRHI GRFEVRRGRF DNWDDHDGEN  120
LSWLSSTRDL RNSDEARRGK DDRVLGRSDD IDRKEERGLR RLDERSERDE MRRVRSDVFG  180
EVSSVRGLTI MDEQERDRDR EYRQDGGSGE GVGRMMQRKP SFSGPMAQFG SGKGWGVGDK  240
KSELSRFERY GTGNRDGSRA EYEGNSRDLG FPYGWRRERS QSSAIARHSS FTSGNRSFGE  300
HGGKGSLSVS SGHDSPFVTG LSSNQDSDHP SPSKRPRLGW GQGLAKYEKK VGDTEDVSPS  360
VVRFDSKKDG DGEIHSNAEE VKKGNVSHEK LPEATPSGVS SSDLQKPCPM VGIQPEDGEG  420
FSDGLEKREK NENKSFLWRD HVRREESGEN SNSCALLGII PRIGDVKNPV VTEEMQRLEQ  480
IPASPVRMKD SANSTEEQKN ESKCPLSNGI EEPELNGLDP VSHVLVEDSE SREKNDEVTA  540
SELQESESLG RKNQSLVPSV SKVEWDFKCS AHAKTTEVLG DSHQTVNIGE KIKVEGVLEL  600
EPARKLSKSM DLDEDEDVRG VPLESADLNI DEGVVVVSSR SSPLSAVSEK SSYYEEQSDY  660
EVATGGSSLQ EHSLSMEESL MMENKENARL AGASFLHLLP ENLKREPYQQ LYDSPTEALV  720
WQHNVETHKK IEDMLLKKIS EKHHFHKFKE RILTLRFIAL KEAWKQEQKG LSGLRNRPKS  780
VSRWDNEGRS SHGPPSQRFS LRLRPPSMNR LDSESDAAKA MKKLMKEPRV EALRPVLKMP  840
AMILDEKERA SRRFVSRNAL VEDPVTVEME RKTLNPWTEV EKKIFVEKFA LHYKNFKEIA  900
SHLQYKTTAD CIEYYYRNQK SESFSKSKEG GHSKSLGDRT KPSTFLTPTA VAIKRNLKAN  960
CATVEALNVA TMNMKVSQLS SQVSEHAKTM TSSNHSLSMP ADAKIRKSHL KESKVLEVIL  1020
PSGTSVETVT SSLISTPCSV SSTAVPLTDE CKEKGFVKER VGRGPSATRS SHSEQHLAGP  1080
KSTRSTYLRR MSSKAATQEG SQWTDEEREL FTSAVATHGK DFRLIAAHVG SKSQSQCKSF  1140
FSKTRKRLGL DELVEQFQAN EAAAMLVQSF RHDAELLQEV KQISTAQMDA SAGVVGHSVD  1200
ELSDTAAAVS TLERLKEQSK CFANDMSDLS LVADAAAAME EMSLMKSESP SRDFSNNKQL  1260
LEIAELAHEH LKVEPSNIAA IRQEGEDDSE TTKSDDSCQV DTQAEIDIVV DQAAAALLGM  1320
SETLVDNSGL KRSKSEAKVG TRTSPVSVFS RSQSARLSTS SPPLHAVFET NVCLTSGRNS  1380
RQAKERVNST TSCKPTTRDR PQDMQDAQSG RKGKDTGGGE PKLRREPTSW TQEEKEKFAV  1440
ILQEHGKDWT LLHQSLPSKS LTQIKTYFQN SKARSRLPAV VKLMNVVRRD GGSRKRKAEG  1500
YESSRKAAEL GPPFKQKVRA NAASHEFDDT TQEEDNLFRS ASVSGGTGVG VDILAYAARF  1560
GTYPGQPINQ DTLSMNGMQH LARPMPTSNT YVQESKQDGH QAFRSGARPV LPTPLGIRPH  1620
VGDGLLRQLS SSVPSKACSP DLQVLSSNVG PQAEPPAAIH QVAQQVQQML AQQQHLQKQL  1680
ALLIQQQAAL PQALLPQHQQ ATEQTLQSAR PLEEKLQQVV QQLQQQQALA QSQEGEIHNH  1740
MHFQYQQAPH GRGILKVKPI REAISNPFAD LAILPSPDVL QNQHISRNQE IQLQQQDHSL  1800
SLGMRTIPST AGGSTAGLHE NHSKTLDLQD SDTDTDTDCE GMGSKQMVAE DSHQRMSVVH  1860
SSSSGQQQGA AQSTTSTLSS DSEQVKSWDV KLFGQSLLSK PTALPSTMPR ITGSSIQEFV  1920
KPNISSPVAT VTYPAGSLSK EFKPSESLPS AFGRVGASSS VAEGQPTSWA GMSSLLEKLG  1980
VYGAWSTTSS LQLSEVTELS RKEPDSEGTQ DAVTSMPTIP DRQHTDNQDL VLTSEQGPQR  2040
DDGHHDGERE LSACQSETRG RETTVEETPF LGRIQNCSSE NVVSLDAGQC QIGLDSALPA  2100
SHMKSFPTVS AEPGHWGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-17	832	924	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-17	832	924	2	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16835	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380079.1	0.0	uncharacterized protein LOC112284485 isoform X3
TrEMBL	A0A2K1KBX4	0.0	A0A2K1KBX4_PHYPA; Uncharacterized protein
STRING	PP1S2_775V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-40	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_16800V3.3.p
Entrez Gene	5914945

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]