PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_12740V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LSD
Protein Properties Length: 178aa    MW: 18585.7 Da    PI: 7.9654
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_12740V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.68.3e-131943125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCrtlL YP GA++VRCalC  V
  Pp3c7_12740V3.3.p 19 CSGCRTLLVYPQGASNVRCALCSSV 43
                       **********************876 PP
2zf-LSD146.36.8e-155882125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggCrtlL+Y rGA+sV+C++C+tV
  Pp3c7_12740V3.3.p 58 CGGCRTLLMYMRGATSVQCSCCHTV 82
                       ************************9 PP
3zf-LSD142.21.4e-1396120125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        CggC+ +L+Y +GA sV+CalC++V
  Pp3c7_12740V3.3.p  96 CGGCGMTLMYAYGAQSVKCALCQFV 120
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.9E-151646IPR005735Zinc finger, LSD1-type
PfamPF069436.0E-121943IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.7E-165584IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-125882IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.8E-1193123IPR005735Zinc finger, LSD1-type
PfamPF069434.7E-1296120IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MMPYPPMQGG QPQHGQLICS GCRTLLVYPQ GASNVRCALC SSVTQVPPHG TEMAQLVCGG  60
CRTLLMYMRG ATSVQCSCCH TVNLAMEAPQ VAHINCGGCG MTLMYAYGAQ SVKCALCQFV  120
TSITMLNVRV PLPSQQPRPP QAAGGPAPAP TSSHTQTVVV ENPMTMDESG KLVQSVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.65260.0gametophore| protonema| sporophyte
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381198.11e-125protein LOL1-like
SwissprotQ93ZB15e-57LOL1_ARATH; Protein LOL1
TrEMBLA0A2K1KBH61e-121A0A2K1KBH6_PHYPA; Uncharacterized protein
STRINGPP1S75_166V6.11e-124(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-56lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]