PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_1240V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 515aa MW: 56498.7 Da PI: 5.9473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ r r +lg+f+tae+Aa a++ a+++++g Pp3c7_1240V3.2.p 27 RFRGVRKRP-WGRYAAEIRDPNT---RERRWLGTFDTAEQAALAYDTAARSMRG 76 59*******.**********944...4999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-28 | 27 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-32 | 27 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.96E-28 | 27 | 83 | No hit | No description |
Pfam | PF00847 | 5.1E-11 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 27 | 84 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.733 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MCSREVEKVH KVEKVGVNRV KKPQEGRFRG VRKRPWGRYA AEIRDPNTRE RRWLGTFDTA 60 EQAALAYDTA ARSMRGLKAR TNFVYPAHQT CILSAALTAS RASKENLAQP AQKQRKFDWF 120 SALSRGELQR VLVNYHDIGA AHQSSVESCH DYTDVLENVE RLASAISDPP RSQRVCELPQ 180 LIPPSRNHVE GTGTRDLCTN GSHWFRGDSA SQCSGLVLKD DDNDEIANST TTKSNLLDSG 240 TVPRHSCEVA LKGTAVVTRQ GKVSHSAEST LTDNIDDSMT TCAEITQALT QNCRETSFEV 300 VAGSIAQVVS RYVDSSPRSM RTGTRNALGI NSNPCLFSTQ VPYSDDSSLS MASPPADTAS 360 YPNSGVVSHS SVVGLPRDVP VSEVCCRSNQ GPVDPTQNPD NIQCMLPLSL RTSLSLDSQD 420 LYGDLPLGWS VQPQTTTTGL ISSSSFYPQT MEPDLSQTWS NLCELPASWD FSCLTFPELT 480 DVKSHSTAPW APEWNDFARA SQLHGFDGFF TDEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-20 | 24 | 83 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379869.1 | 0.0 | uncharacterized protein LOC112284361 | ||||
Refseq | XP_024379871.1 | 0.0 | uncharacterized protein LOC112284361 | ||||
TrEMBL | A0A2K1K9U8 | 0.0 | A0A2K1K9U8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S130_106V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-30 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_1240V3.2.p |