PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_12210V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 253aa MW: 27918.2 Da PI: 8.9424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 1.9e-09 | 4 | 24 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 Cr+f+r G C++G rCkF H Pp3c7_12210V3.3.p 4 QVCRDFQR-GSCRFGTRCKFLH 24 68******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.9E-6 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.784 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.83E-5 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-7 | 3 | 24 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-7 | 4 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSRQVCRDFQ RGSCRFGTRC KFLHQTGSAP QQQNAFNSGP KQTQPGFGTN RFGAFNNAPN 60 YFNNQRTTQP QSTAPKDHRC GNPKVCQDQI KEDISTEQPT FWRLTSYAHW KFLPNDICGD 120 VSPEELRALA YDSGKQGLPF QEIVRREHSM NAAKIAEFET LQRNPYRGPA TQMSGGTPLG 180 QTQPSPFTSH TQTGFGFGTQ NQSAAPAGSF GQPQLMFGVP VTTPQAGYAT RLNSLEIKLC 240 IFCINGITLL LE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380686.1 | 1e-167 | zinc finger CCCH domain-containing protein 16-like | ||||
TrEMBL | A0A2K1KBF8 | 1e-165 | A0A2K1KBF8_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 6e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_12210V3.3.p |