PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_12210V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 385aa MW: 41046.4 Da PI: 9.021 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.3e-09 | 4 | 24 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 Cr+f+r G C++G rCkF H Pp3c7_12210V3.1.p 4 QVCRDFQR-GSCRFGTRCKFLH 24 68******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.9E-6 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.784 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-7 | 3 | 24 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.18E-5 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-7 | 4 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MSRQVCRDFQ RGSCRFGTRC KFLHQTGSAP QQQNAFNSGP KQTQPGFGTN RFGAFNNAPN 60 YFNNQRTTQP QSTAPKDHRC GNPKVCQDQI KEDISTEQPT FWRLTSYAHW KFLPNDICGD 120 VSPEELRALA YDSGKQGLPF QEIVRREHSM NAAKIAEFET LQRNPYRGPA TQMSGGTPLG 180 QTQPSPFTSH TQTGFGFGTQ NQSAAPAGSF GQPQLMFGVP VTTPQAGSGF SNAFNKTPTN 240 PNSLQSSGFG QYSQLGQSGF GSAPKSVFGS QTITPFGTGI NVFGGGFGTP AAAQPAGTTN 300 SVNFGTSPFT TLGGFGTSPF AIPAANPQPS APAVIPPATF NTLPLGTAPP STKQTAIGVD 360 GIWQKETWKL GEIPEEEPPE SIRY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3861 | 0.0 | gametophore| protonema| sporophyte |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380686.1 | 0.0 | zinc finger CCCH domain-containing protein 16-like | ||||
TrEMBL | A0A2K1KBF8 | 0.0 | A0A2K1KBF8_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 3e-43 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_12210V3.1.p |