PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_10780V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 211aa    MW: 23930.5 Da    PI: 10.0416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_10780V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.9e-134185248
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48
                       +ykG+r+++  +r+ +eIr +   + ++++++lg++ t+eeAa+a +a
  Pp3c7_10780V3.2.p 41 KYKGIRYRPELNRYISEIRPV---QpRKRKIWLGTYKTPEEAARAFDA 85
                       8******************97...3446*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.10441102IPR001471AP2/ERF domain
CDDcd000181.18E-124188No hitNo description
PfamPF008471.0E-74184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1641100IPR001471AP2/ERF domain
SMARTSM003808.2E-741105IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-124198IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MACDTQVVQS NLSSSVVGRG MGCQRSLSSR PANPRAVPHE KYKGIRYRPE LNRYISEIRP  60
VQPRKRKIWL GTYKTPEEAA RAFDAGIFYT KKQIDYNFED SPSILEPLPE NLSEEEVHVQ  120
IQKKAKAAAA TMQPQHEHLI LRKIASKIAH YSLESPIYYG RTHEPPKEIQ FAVVLNRSRA  180
LCIGGTIRLH HRILSYVNVM YIFPQSSGVT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.58187e-69protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388119.14e-56ethylene-responsive transcription factor RAP2-9-like
TrEMBLA0A2K1KB911e-128A0A2K1KB91_PHYPA; Uncharacterized protein
STRINGPP1S87_98V6.11e-129(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-11ERF family protein