PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_10780V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 20258.2 Da PI: 9.9188 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.4 | 7.3e-13 | 41 | 85 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 +ykG+r+++ +r+ +eIr + + ++++++lg++ t+eeAa+a +a Pp3c7_10780V3.1.p 41 KYKGIRYRPELNRYISEIRPV---QpRKRKIWLGTYKTPEEAARAFDA 85 8******************97...3446*****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.104 | 41 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.55E-13 | 41 | 88 | No hit | No description |
SMART | SM00380 | 8.2E-7 | 41 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-8 | 41 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 41 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-12 | 41 | 98 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MACDTQVVQS NLSSSVVGRG MGCQRSLSSR PANPRAVPHE KYKGIRYRPE LNRYISEIRP 60 VQPRKRKIWL GTYKTPEEAA RAFDAGIFYT KKQIDYNFED SPSILEPLPE NLSEEEVHVQ 120 IQKKAKAAAA TMQPQHEHLI LRKIASKIAH YSLESPIYYG RTHEPPKEIQ FAVVLNR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5818 | 2e-71 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388119.1 | 9e-57 | ethylene-responsive transcription factor RAP2-9-like | ||||
TrEMBL | A0A2K1KB91 | 1e-128 | A0A2K1KB91_PHYPA; Uncharacterized protein | ||||
STRING | PP1S87_98V6.1 | 1e-129 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_10780V3.1.p |