PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_9970V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 472aa MW: 52126.1 Da PI: 7.6117 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv ++++ G g+W++ +++ g+ R++k+c++rw +yl Pp3c6_9970V3.2.p 14 KGPWTPDEDQKLVTYIQRNGHGSWRALPKHAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++ eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Pp3c6_9970V3.2.p 67 RGRFSFEEEQVIIHLHGILGNR-WSAIAAHLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.321 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.599 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.72E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MGRTPCCDKM GLKKGPWTPD EDQKLVTYIQ RNGHGSWRAL PKHAGLLRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEQVIIH LHGILGNRWS AIAAHLPGRT DNEIKNYWNT HLRKRLLQMG 120 IDPVTHKVRS NLLIENLDLK PMVSSTLSHM SQWDRVRMEM EARLSSDYFA KSSAHGAAIF 180 EASGTSASFI KAPSDCSMRS WKTQVSESLL RRDFGVLEKL PPCSMDLQTV LQDWEDSLHC 240 QPMEPGLYDS QMRAKTHSGS HSGYSQTPRN DNCSGTTVTD LAARFETFPS FHQTSPSPSP 300 LPQTSQISDS FTSSGTKLFP DLPKPNSLPS MIPEHFSPTS TLSSPFGTSP SDFMVPPPSS 360 NCEIAFSTSP PLQLPSPTFW TSLSAPTTMG AGDLQLPSEI PELLMELHAE PAVPDLIVAT 420 VPTTTAGTPG WTSQQGLIES KDYWANMLHL VGPPASQQLS TLLSTPARLT R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 12 | 116 | 5 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024377787.1 | 0.0 | transcription factor MYB41-like | ||||
TrEMBL | A0A2K1KF28 | 0.0 | A0A2K1KF28_PHYPA; Uncharacterized protein | ||||
STRING | PP1S317_55V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 8e-85 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_9970V3.2.p |