PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_9830V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 208aa    MW: 23864.4 Da    PI: 10.9056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_9830V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.9e-11102144150
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                       +  +GV++  k+ +W A I++      +k+++lg+  + eeAa+++++a+
  Pp3c6_9830V3.7.p 102 CVMRGVYF--KNMKWQAAIKVE-----KKQVHLGTVSSQEEAARLYDRAA 144
                       568***99..47*********6.....6********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.79481145IPR001471AP2/ERF domain
PfamPF008471.3E-4102144IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-7103147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-7105149IPR001471AP2/ERF domain
SMARTSM003803.1E-4105160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVSIRKRRHG GLSPDKKSQS QAYRNSSYPL PTAIPAGSLN TDKDSSLKQE VTVSRFRFAT  60
LPAIPSFREL HQLYNPVSLP KEREVKKRKR QRRKHQMNQE SCVMRGVYFK NMKWQAAIKV  120
EKKQVHLGTV SSQEEAARLY DRAAYLCGRE PNFELTEAEK QELQLLRWEE FLELTRQSIL  180
SKKRKRGNKN SSGKTTQAAS SPKALIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17988PKEREVKKRK
28089KEREVKKRKR
38691KRKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377636.11e-153ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024377637.11e-153ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024377638.11e-153ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024377639.11e-153ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2K1KF141e-152A0A2K1KF14_PHYPA; Uncharacterized protein
STRINGPP1S317_72V6.11e-152(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-42ERF family protein