PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_9830V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 21459.8 Da PI: 10.9709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.3 | 5.7e-11 | 80 | 122 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 + +GV++ k+ +W A I++ +k+++lg+ + eeAa+++++a+ Pp3c6_9830V3.2.p 80 CVMRGVYF--KNMKWQAAIKVE-----KKQVHLGTVSSQEEAARLYDRAA 122 568***99..47*********6.....6********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.794 | 59 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-4 | 80 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-8 | 81 | 125 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-4 | 83 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-7 | 83 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVSIRKRRHG GLSPGSLNTD KDSSLKQEVT VSRFRFATLP AIPSFRELHQ LYNPVSLPKE 60 REVKKRKRQR RKHQMNQESC VMRGVYFKNM KWQAAIKVEK KQVHLGTVSS QEEAARLYDR 120 AAYLCGREPN FELTEAEKQE LQLLRWEEFL ELTRQSILSK KRKRGNKNSS GKTTQAASSP 180 KALIC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 66 | PKEREVKKRK |
2 | 58 | 67 | KEREVKKRKR |
3 | 64 | 69 | KRKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024377636.1 | 1e-123 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024377637.1 | 1e-123 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024377638.1 | 1e-123 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024377639.1 | 1e-123 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A2K1KF14 | 1e-122 | A0A2K1KF14_PHYPA; Uncharacterized protein | ||||
STRING | PP1S317_72V6.1 | 1e-122 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_9830V3.2.p |