PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_8660V3.2.p
Common NamePHYPADRAFT_99319
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 654aa    MW: 72246.6 Da    PI: 6.4409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_8660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-14442488354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h + Er+RR+ +N+++++Lr+l+P++     +K + a+i+  A+eY+k+L
  Pp3c6_8660V3.2.p 442 VNHFATERQRREYLNEKYQTLRSLVPNP-----TKADRASIVADAIEYVKEL 488
                       68**************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-16439504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-12442493No hitNo description
Gene3DG3DSA:4.10.280.106.2E-15443501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MVGPPRRDRQ PSRSGFGSKR CWVQEDEIRR TKGRARADQG DVSWASFGDS GRKEEGDATK  60
ISTFLALSNL PECERELQVR IRSHASDLER NPTSLPETPT SPAILLQENN VSGQLLSSKR  120
VRLIQNMHRY NSPNNMTYDD SRYFNGNQES TFDVENEAPE TAGRNMMLNF GGAMDRLDPS  180
ASFPGLGELP SNGMEPAVEQ NLTGTFTGDL NSTAYEVGDD HSHLLQEMLQ QHPQSQQAQS  240
TDAHSQAPAT ASHGSWEDSL HVLQEMVHLQ QQQQQQVHQI YNQTQTEHAF NQGYNADRFR  300
SAAFGGSAKF PGESDLLNLF QFPRSTTTSA IPSFGYTAGI RGKGPLYSTS TISGPVNTGS  360
IYENRGIGYD PLLAHHLQNS SESFFHNLSR GNTPETSRHG GPNILVDLDQ EREDLSGKNV  420
ASAYGSKRDH GAASGKGEPR GVNHFATERQ RREYLNEKYQ TLRSLVPNPT KADRASIVAD  480
AIEYVKELKR TVQELQLLVQ EKRRAAGDSS GGKRRRSMDD ADNYAGSCTT ENASNGHLVM  540
QKGNDTFSTD GSQLRSSWLQ RTSQNGTHVD VRIVHDEVTI KVNQRRGKNC LVFDVIAVLQ  600
ELQLDLLQAS GATIGEHDVF LFNTKILEGS STFAGYIAVK LLDALDRHLV INP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1501515KRRAAGDSSGGKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377595.10.0transcription factor EAT1-like isoform X1
TrEMBLA0A2K1KEW00.0A0A2K1KEW0_PHYPA; Uncharacterized protein
STRINGPP1S386_12V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-46bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]