PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_6900V3.1.p

Common Name

PHYPADRAFT_93998

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

SBP

Protein Properties

Length: 687aa MW: 73567.6 Da PI: 7.3919

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_6900V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5.1e-42	223	299	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+egC++dls+ak+yhrrhkvCe hskap+v++ g++qrfCqqCsrfh+l efD++krsCr+rLa+hn+rrrk+q+ Pp3c6_6900V3.1.p 223 CQAEGCKSDLSTAKQYHRRHKVCELHSKAPNVVAGGQTQRFCQQCSRFHSLGEFDDGKRSCRKRLADHNRRRRKPQP 299 **************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-35	215	284	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.009	220	297	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.29E-38	221	300	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-31	223	296	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MNSSTHTNEQ QGDLSWSTEN WDNPGAVSTF DQASRPYNSA NRQEWEWDPM ILAQHPGSGG 60 SADDGSHDGD CLKNHISGGT MSSFRTTYNM NMLSAGLPSN FTQNPMGIFS SAGIRHYGSL 120 DGPGQLSTSN IHSALGPSGI PGLAATSGSS LDNDIRSYDQ RRREFIAAGM HNHHVKREEV 180 NDGHARIGLN LGVRTYFSTE DTTTNRLVKR HRAGSPGPHI PLCQAEGCKS DLSTAKQYHR 240 RHKVCELHSK APNVVAGGQT QRFCQQCSRF HSLGEFDDGK RSCRKRLADH NRRRRKPQPY 300 ASAPGGTSAE CIGIKNGEDN LSDSKSLIIP LKSRSSPSSV SLEDSDEKPG SAGNNLHLRS 360 SSQGYGRAPC DDQHSSHSEM QMTSQAMTGS DSLLSAMSSV PLMLQNAKRQ MTMIGGTGNH 420 GHDHSIYQQH LHVQTGSSTG KTGPNLSLSS LGGQLGLSHQ GGGRSQTIPG QIYNGLESPV 480 SWLRPLNPRS DLTHVVGRQS AMNLQHLMSN DSKSGITSAS ANSSNTQEHD VQAFSPSSQN 540 LIPRDIASPE WMLGSMAGQA PRTGSNPYGT SALNNLSGNG QLESGHQIMS LIDQPNQGCG 600 HPGNGGCNQT VQGSHTPMEF MQQHNTVTEA DSGGDNTSRG GGSTVDSPDM KYPELQALRP 660 YASGPSSIFN SRHTLLSGNF SYETMA*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MNSSTHTNEQ QGDLSWSTEN WDNPGAVSTF DQASRPYNSA NRQEWEWDPM ILAQHPGSGG  60
SADDGSHDGD CLKNHISGGT MSSFRTTYNM NMLSAGLPSN FTQNPMGIFS SAGIRHYGSL  120
DGPGQLSTSN IHSALGPSGI PGLAATSGSS LDNDIRSYDQ RRREFIAAGM HNHHVKREEV  180
NDGHARIGLN LGVRTYFSTE DTTTNRLVKR HRAGSPGPHI PLCQAEGCKS DLSTAKQYHR  240
RHKVCELHSK APNVVAGGQT QRFCQQCSRF HSLGEFDDGK RSCRKRLADH NRRRRKPQPY  300
ASAPGGTSAE CIGIKNGEDN LSDSKSLIIP LKSRSSPSSV SLEDSDEKPG SAGNNLHLRS  360
SSQGYGRAPC DDQHSSHSEM QMTSQAMTGS DSLLSAMSSV PLMLQNAKRQ MTMIGGTGNH  420
GHDHSIYQQH LHVQTGSSTG KTGPNLSLSS LGGQLGLSHQ GGGRSQTIPG QIYNGLESPV  480
SWLRPLNPRS DLTHVVGRQS AMNLQHLMSN DSKSGITSAS ANSSNTQEHD VQAFSPSSQN  540
LIPRDIASPE WMLGSMAGQA PRTGSNPYGT SALNNLSGNG QLESGHQIMS LIDQPNQGCG  600
HPGNGGCNQT VQGSHTPMEF MQQHNTVTEA DSGGDNTSRG GGSTVDSPDM KYPELQALRP  660
YASGPSSIFN SRHTLLSGNF SYETMA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	213	296	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	296	KRSCRKRLADHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF016493	0.0	EF016493.1 Physcomitrella patens SBP-domain protein 7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024378733.1	0.0	squamosa promoter-binding-like protein 14 isoform X2
TrEMBL	A0A2K1KEN3	0.0	A0A2K1KEN3_PHYPA; Uncharacterized protein
STRING	PP1S252_40V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	4e-50	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Pp3c6_6900V3.1.p
Entrez Gene	5942361

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]