PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_29350V3.2.p
Common NamePHYPADRAFT_83829
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 648aa    MW: 71975.5 Da    PI: 6.2686
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_29350V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS165.83.5e-513215992273
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPi 90 
                        v+lL  cA a++s++ +++q+l++ l++ as  gd++qR+aay  +AL  r+++s +     l+p++ +++ s    +++++   f+e  P+
  Pp3c6_29350V3.2.p 321 VQLLNLCAAAIESQNVSRTQHLMWVLNDFASVVGDANQRIAAYGHRALFCRITGSLEAAKTYLRPKHYDQELSLGPKMVHRAlvkFHEHVPW 412
                        799***************************************************9999999999999998887766666666678******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.......skeeleetgerLakfAeelgv 174
                        ++ ++ +  q++le  +g++r+HiiD+++++G+ Wp +++aL sR++gpp  lR+T + + + +        + e +    rL kf   lg+
  Pp3c6_29350V3.2.p 413 HQNCYSIMSQTLLEVCAGKSRLHIIDIGAGKGIEWPIFIDALVSRSGGPPsILRMTMIRDLQREehnlrsqLNSESSDFMTRLVKFPGLLGL 504
                        **********************************************9999689******977666666655455566666777777777777 PP

               GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                        ++e n++          ++L++ ++E laV ++++lhrl +e+ +        +rd++L+++ +l+P+v++ +++++dh s++Fl+rf +a 
  Pp3c6_29350V3.2.p 505 HVEVNMV---------RKALECVTQELLAVICQFRLHRLSEEPDTNCLpprlsPRDKFLDFLFQLNPHVFIQSDNNCDHCSQDFLTRFRNAS 587
                        7777774.........6789999****************987755432335559************************************** PP

               GRAS 262 eyysalfdslea 273
                         + + +f+s+  
  Pp3c6_29350V3.2.p 588 AFWWNCFESIVF 599
                        *********944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.238294647IPR005202Transcription factor GRAS
PfamPF035141.2E-48321599IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MFGNDVIGGG QQVMDLSGGN PIQCGAAQPW VNPYNNPEPE YVYLVSPQNS HTLSENGYSN  60
LSCGPVPQPN YMVRPDSNFL PQLNPVQQFS APHMDYRYLP PAQPPVSHEP YGTLSDNNLQ  120
QYDNVWQSLE SDFLAQTSVQ YNDVPGDNNM IEVVHGFHDP PAHISISVSN EVPLTSRPVA  180
DHRAWTMPSH PIPGVAESSG SVPAEYGNTS SPTSTRQSQE FNPSHGFAGQ GQVPSDTVST  240
TGTGGNHAAA QRSSRPKSNF EDQMQTSHQQ YRKVLDDGEV ACASGGSSYN ESDPTVDNDL  300
STLMAPGRSG LQSLGESSWA VQLLNLCAAA IESQNVSRTQ HLMWVLNDFA SVVGDANQRI  360
AAYGHRALFC RITGSLEAAK TYLRPKHYDQ ELSLGPKMVH RALVKFHEHV PWHQNCYSIM  420
SQTLLEVCAG KSRLHIIDIG AGKGIEWPIF IDALVSRSGG PPSILRMTMI RDLQREEHNL  480
RSQLNSESSD FMTRLVKFPG LLGLHVEVNM VRKALECVTQ ELLAVICQFR LHRLSEEPDT  540
NCLPPRLSPR DKFLDFLFQL NPHVFIQSDN NCDHCSQDFL TRFRNASAFW WNCFESIVFD  600
YNGRDPDGRQ INMASLQWRN PPTTFTSVWK TPSTCLKTSC KYSKLHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-2231759684368Protein SHORT-ROOT
5b3h_B2e-2231759630314Protein SHORT-ROOT
5b3h_E2e-2231759630314Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375362.10.0nodulation-signaling pathway 1 protein-like isoform X2
TrEMBLA0A2K1KHM30.0A0A2K1KHM3_PHYPA; Uncharacterized protein
STRINGPP1S117_143V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-32GRAS family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]