PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_28370V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 592aa    MW: 63331.8 Da    PI: 6.8596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_28370V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19243292255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae+Aa a++ a+ +++g
  Pp3c6_28370V3.3.p 243 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEQAAMAYDTAAIRFRG 292
                        7********.**********93....36************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-36243306IPR001471AP2/ERF domain
CDDcd000181.59E-33243301No hitNo description
PfamPF008472.4E-13243292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-32243301IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22243301IPR016177DNA-binding domain
PROSITE profilePS5103225.37243300IPR001471AP2/ERF domain
PRINTSPR003672.5E-11244255IPR001471AP2/ERF domain
PRINTSPR003672.5E-11266282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MCFLQSLPGR NLSSDKLDPS NDPPDTGGHS SPSRTRAGSG QISKAFKMVS ALTQTGGASS  60
RQDYPESQRA ENTAPGKGIV GQKRHRSSPT AQELVGYGET WNEQAPSARN IKQEVGTSTG  120
ALKRETDAGS YVNVTDARAV TWTRVLVDPK AESTERPGTY SRSLSLTQEI FTSQDSCKIS  180
DLSTPPHSSP LSIEDVPRPS GGNLEKLDQA GKVGDGSSHQ QESSEAGPLV TQQVLAPPPK  240
KRRYRGVRQR PWGKWAAEIR DPQKAARVWL GTFDTAEQAA MAYDTAAIRF RGLRAKLNFP  300
DGLISPASLA VGIATASQPE SSPTSIPVTT LSTSTSFLSQ SSGRSIQSMP RSRNLPSISS  360
EARTSVPYQS PSVPLPSHQI SSGASAQNLR SLQAPGIFEP LARSPGLMQL SGSNSGDNQS  420
GRRQGLMSFQ QPQTHPQWQR LQPGSYQSLV PVQQQNSQTL RQTPELSRPI SSLQYENLYG  480
EGPHDPILHY EPSTSGVPQS FSVDFCGANL ISDPGGQGFP TSQSPTAFID HHSPSSASVS  540
SANPTPYIEL SYDQIFDQPG EVQSTFPDAV SPSGILSLDN PFSDDTSLCQ E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23242300160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379224.10.0uncharacterized protein LOC112284010
RefseqXP_024379225.10.0uncharacterized protein LOC112284010
TrEMBLA0A2K1KHH20.0A0A2K1KHH2_PHYPA; Uncharacterized protein
STRINGPP1S117_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-32related to AP2 6l